RNA id: XM_039809730.1


Basic Information

Item Value
RNA id XM_039809730.1
length 2514
RNA type mRNA
GC content 0.46
exon number 15
gene id malt3
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16766929 ~ 16776366 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGCGTACGCTTGTGGCACGACTTTTAGACTCGCTCTCATTTCCTACCTGTTGGAGTGCTACCTGTGGACCTGCTCTCTGTTCCGTCTGTTGGATTTTGTATAATGAAGTTCAACTTCACTTACCTCCATCCTGACTCCTGCTCCTTCCGTGACAGTTCTTGAGTTGTTGATGTCTGttataagaagaagaaaatgcaCTGATGACTGCATTCCGCACCAAACCCTGTCAAATAATGATCGGAGAAATTCTCATAGTTCGCCAtcctttttctgtgtgtgtacctgtggacCATAAGGTGACCCTGAGTGTCCGTGCTGAGGGCACAGGTATCCTCAACTACCAGTGGTTCACTGATGAAAAGGAGGTGTCTGGAGGCACTGAAGCAGACTTGACCATTAAAGCTAAAAAAACTAAGCTCTATGTGTGCCGTGTGAATGATCACTTTTGTAACTGCGTGTTCAGCGACTGGGTGAAAGTCAAGGTGTTGGACATTGATAAATCAGgGCTGCCAGTATACTGGCAGGGTGAGCCACACATCGCAGTCAATCCTAAACCCCAAACAGTCCGACAAGGGTCAAAACTCACTCTCCGCTGCGCTGCCTTTGGCATTCCTGCTCCAAACTATCAGTGGTACAGAAATGGACAGCCGCTGCTGGACAAGACTAGTGACATGCTGCAGATTGACCGTGCAACAGTCGAACATGGAGGATCATACCTGTGCTCCATATCTAACGTGCTAGAAGAGACATGGACTGAACCAGTCAATGTTGACATTGTGCAAACTGCTCAGCTTCCTCCTGCAGTACCCACAGCCACTGATAAAGTCGCCCTACTTATTGGCAACCTGAATTACTCCAACCACCCTGACTTAATGGCCCCCATTATGGATGTGCATGAGCTGGCCAACCTCCTGCAGCAGCTCGGCTTCAGAGTGGTTTCTCTGCTGGATCTCACCAGGGAGGAGATGCTGGCTGCTATTGACAAGTTCATGCAGCTCCTTGACAGAGGAGTTTATGGCCTTTTTTACTACGCGGGTCATGGATATGAGCATGCTGGTAGGAATTACTTGGTGGCTGTTGATGCTCCACAACCGTATCGACCTgaaaactgtgtctgtgtgcagaggGTCATGCTCAGCATGCAGGAAAGACGGACTGCACTGAGTGTTATCCTGTTGGATACCTGTAGAAAATGGTACAACCAGGATTGCATTCCTTCAGGCATCATGCCATTGGGACCCAGTGGGAACACTGTTTACGGTTATGCCACATGTGAAGATGCTGAGGCGTTTGAGGTCCAGGACGGGGGGAAAAGTACTGGAATCTTCACGAAGTACTTGAATGCGCACATCCTGCAGACTGAGAAAGTCACACATGTTTTAGAAAAGGTGTCTGAGGATCTAGGCCGAGACCCTCTAGTCACAGGCAAGCAGCAAGTGGAGATCAAACACACCCTGAAGGAACCTCGATCCCTTGCAGACCCAGTACGGACCACTGGCCATACAAGGGAGCTTCACCTGCGAGATGCCTGCTGGAGACAAGCAAATGAGCTACCACGGAAGAAGCAGCTGAAGTTTGTTTGCGGAGTAGAAGTGGAAGTCAGCTTCTCAGCTTTGTTCTCTAATGTCTTGGTGGCTTTTGCCACTGTAAAGACTACAGGCCCCCGAAACCAGGACTGCACTGTCACCCTGAGTAGCATACCTCCAATACAAGACATATTTTCCGGCCCTGGCAGGTCAGAGGAGATGGACTCTCTACTATTTAAGACATCTGATAACCCAGACTGTACTCTGCGACTTTGTGCTCTTCAAAAGCTTACGGAATCGCTGGTGATCAAGGTGGATCTACACTATACTCACATGGACAGTAAGCTACGCCAGACAGAAAGCCAACAGGTGGACATAGGAAAGCCTCTGGTGGCATCCTGTAAATTGCACAGGAGGAGTCATGCAACAACAATCAAGAAACAAGAAGGCGCTTCTGCTCAAAGTATGGGCAACATTTCAAGCAGCAAACCACAGCTGCATCAGACTCTGGCTGGTCCGTGTCGCCCTTTCACCAGAAAGGCAGTGTGTGCTGCTAAAGTTGCAGTTACATGGAGCAACGAACCTGAAGAGAATGATGAAAATGAACTGCAAGACTTCACTCTCCGACATTAAATCTTTTCGGTGCTATTGTAAATACTTGTTTGGAAATGTGATGCTTTTTACTGATTTGATTAGAAATTACTCCTTAGTTCCTGATCATACATCTTGTGtgtgattgatgatgatgatgatgaatgagTGAGGTTTGTTTGGTTTGCATTACCAGTCTTTAATGCTTAGCTCAACACTGAAGAAACATTAACACTTACTTTTGCTAACCACTGATTTCATCATAAATTGTATAATACTTAAAGAGACATATTACTTTTTATCAGTGCCAAGCTGGTTAGCCTAATTTATCAAATAACGACCATTATGGTTAATAATTTATCTAATAAAGACCACTacttttatcactattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114993 lncRNA downstream 66045 16697144 ~ 16700884 (-) False LOC120563869
TU114976 lncRNA downstream 84041 16680151 ~ 16682888 (-) True G85373
TU114960 lncRNA downstream 107613 16650139 ~ 16659316 (-) False LOC120564211
XR_005640080.1 lncRNA downstream 107619 16649841 ~ 16659310 (-) True LOC120564211
TU115047 lncRNA upstream 7932 16784298 ~ 16787982 (-) True G85428
TU115063 lncRNA upstream 32916 16809282 ~ 16809502 (-) True G85436
TU115073 lncRNA upstream 34708 16811074 ~ 16816147 (-) True G85441
TU115089 lncRNA upstream 90761 16867127 ~ 16869163 (-) True G85453
TU115097 lncRNA upstream 121318 16897684 ~ 16899795 (-) True G85460
XM_039808320.1 mRNA downstream 3211 16697095 ~ 16763718 (-) False LOC120563869
XM_039808318.1 mRNA downstream 3212 16697095 ~ 16763717 (-) False LOC120563869
XM_039808316.1 mRNA downstream 3212 16697095 ~ 16763717 (-) True LOC120563869
XM_039808317.1 mRNA downstream 3213 16697095 ~ 16763716 (-) False LOC120563869
XM_039808321.1 mRNA downstream 51765 16697095 ~ 16715164 (-) False LOC120563869
XM_039807928.1 mRNA upstream 15788 16792154 ~ 16803322 (-) True slc28a1
XM_039807680.1 mRNA upstream 43948 16820314 ~ 16830164 (-) False si:dkey-24l11.2
XM_039807682.1 mRNA upstream 43948 16820314 ~ 16825506 (-) True si:dkey-24l11.2
XM_039807681.1 mRNA upstream 43948 16820314 ~ 16825472 (-) False si:dkey-24l11.2
XM_039807684.1 mRNA upstream 58966 16835332 ~ 16842414 (-) False pstpip1a
unassigned_transcript_374 other downstream 2143 16764715 ~ 16764786 (-) True trnah-gug_10
TU114908 other downstream 325964 16439374 ~ 16440965 (-) True G85321
TU114652 other downstream 1222847 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 1283003 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1693579 15066039 ~ 15073350 (-) True G85014
TU115062 other upstream 31690 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1150681 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1254642 18031008 ~ 18036276 (-) True G85813
TU115584 other upstream 1254642 18031008 ~ 18036276 (-) False G85813
TU115585 other upstream 1254642 18031008 ~ 18036276 (-) False G85813

Expression Profile