RNA id: XM_039809746.1


Basic Information

Item Value
RNA id XM_039809746.1
length 3422
RNA type mRNA
GC content 0.46
exon number 19
gene id dnm1l
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21355580 ~ 21368976 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTGTTGGTAGATCCTCCAAAGAGACGCCAGTAGCTTTAGCCGTGAGACATTGAATGACTTTGTTGTACCCCTGTGCGGCAGAGTAAATAAAGTTGCCTATCTGACAGGTCGGGATTAGTATTGGAGCTCATGGAGGCCCTCATACCTGTCGTTAACAAACTGCAGGATGTATTTAACACGGTCGGCACAGACATAATTCAACTGCCGCAGATAGTTGTTGTGGGAACTCAGAGCAGTGGGAAGAGTTCGGTTTTAGAGAGCCTGGTTGGCAGGGACGTGCTGCCACGTGGCACTGGCATCGTCACACGCCGGCCCCTTATCCTACAGCTAGTGCACATCGATCCAGAGGACCGCCGAAAAACCAGTGAAGAGAATGCCACAGAATCCAAGAAAAATGGACGCCTTTACAGAGGAATCGATGGAGAGGAATGGGGCAAATTTCTACACACCAAAAACAAGATCTTCACGGATTTCGAGGAGATCAGGCAAGAAATTGAAGCAGAAACACAAAGAATTTCTGGCAATAACAAGggtATTAGTAATGAACCCATTCACCTGAGAATCTTCTCACCACACGTTGTGAACCTCACATTGGTGGACCTTCCTGGCATTACAAAGGTACCGGTGGGAGACCAGCCCAAAGACATAGAGCTCCAGATCAGAGAATTGATCTTCAAGTACATCTTCAACCCCAACTCCATCATCCTGGCTGTGACTGCTGCCAATACAGACATGGCAACCTCAGAGGCCCTCAAAGTAGCTCGCGAGGTTGACCCTGATGGCAGGAGGACGCTAGCAGTGGTGACCAAGCTGGATCTGATGGATGCTGGCACAGATGCCATGGATGTATTGATGGGCAGGGTCATTCCTGTGAAACTGGGCATAATTGGAGTTGTTAATAGGAGTCAGTTGGATATTAATCAGAAGAAGTTGGTGGCGGATGCCATCCGTGATGAATACGCCTTCCTACAAAAGAAATACCCCTCCCTTGCCAACAGAAATGGAACCAAATATCTGGCCAGAACATTGAACAGGTTACTCATGCACCACATCAGAGACTGTCTTCCTGATCTGAAGACGAGGATCAATGTGCTGGCATCGCAGTACCAgtcgttactcaacagttatgGGGAACCTGTGGAGGACAAGAGTTCCACGTTGCTGCAGCTCATCACCAAGTTTGCTGCAGAGTACTGCCACACCATAGAGGGCACGGCCAAATACATTGAGACAACTGAACTaTGTGGTGGAGCAAGAATCTGTTACATATTTCATGAAACCTTTGGTCGCACATTGGAGTCCGTAGATCCTCTGGGTGGTCTGACAACCATCGATGTGCTGACAGCAATCAGAAATGCAACGGGCCCGAGGCCTGCTTTATTTGTGCCCGAGGTTTCGTTTGAGTTGCTGGTGAAGCGACAGGTCAAGCGCCTGGAGGATCCCAGTCTGCGCTGCGTGGAGCTGGTTCACGAGGAGATGCAGAGGATTATCCAGCACTGCAGCAACTACAGCACCCAGGAGTTGCTGAGGTTTCCAAAGCTCCATGATGCCATAGTAGAAGTGGTCACCTCATTACTCAGAAAGAGGCTCCCAGTCACCAATGAAATGGTTCACAACCTGGTTGCCATTGAGTTGGCCTATATCAACACAAAGCACCCTGACTTTGCCGATGCCTGTGGCCTCATGAACAACAACATAGAGGAGCAGAGACGCAACAGAATGAGAGACCTGCCCTCTGCTGTCCCTAGAGACAAGGCAGCAGCCAGTGGCTCTCAGAGCGGCGCTGCCAGCGAGCAGACAGACGGCGGGACGGGGAACTGGAGGGGCATGTTGAAGAAGGGAGAGGACGGACCAGCTACTGACAGAGCCATGCTCCAGGCCCCGCCCCCTGCAAACCCACATAAGGGCTACGCTGTCAACCTGCTAGATGTGCCTGTTCCAGTGTCCAGGAAGTTGTCTTCTCGGGAGCAGAGGGACTGCGAGGTCATTGAGAGACTCATCAAGTCATACTTCCTTATTGTacggaaaaacatccaggacaGTGTACCGAAGGCCGTGATGCACTTCCTGGTGAACCATGTGAAGGACTGCCTGCAGAGTGAGCTGGTGGGTCAGTTATACAAGACGGGCCTGCTGGATGACCTGCTGACGGAGTCCGAGGACATGGCTCAGAGACGCAACGAGGCCGCTGACATGCTCAAGGCGTTGCAGAAAGCCAGCCAGGTGATTGCAGAAATCCGAGAAACTCACCTGTGGTGAGGGCGgtctctcttcatccctcatGAGCCATCCAGAAGCTCCTGCTGTGACTGCCAGCTCCTCAGACGGAGAGGCGAACAACTTAAAAAATGCACTGTTGTGGATATGTGTATATCGAAACATAGTTTTAATGTAAAGAAAGGACTTGGATTTAATGAAGGGCAGTACATATCAGCTCCTCATCATCAGCATCACACATACTCTTGTCCTAGttattatatttttcttatgtaattgaaacaataaataaataggtgTTATGCATCACCACTATGTGGAGCCTTGATGAGGAATGTCTGCTCTTAATGTAGACTTGAATTAAAGCTAGAAATTACAAACCTATGCTGCAACATGGGGTTGCTCCCTTTATCatgtcaattattttattagatgttgacaaaataatGTGTCTACTGCTGATTGTTcaataaatgtacttaatttagatttttctttttggggAAAATGCCCCAACacttcttttgttttgtgttaacagttttgtttttatgtagaCATGGAACTATTCTACACCCCACACATATTTGTCCCTTTGTTTACATGTTTCAACAAGATCTCTTACACATATTTATAGGTTTCAGTATATTTTATGAGCGGTTACTCATTCTGGCTGCTTGAAgttttgtattgtatattgGACTTACATCGAAACAGACAATCTGTGGAGTTTGCGGAGTGGAtgtaatgatttatttattgttttgataTGATAATTGACATGTAACCCAACACAACAGAACAATGAATACATATATAATAGACCCATGGGCCAATCGGTGGTGTCGTGGTCTGCTTCGTCCTGGTCTGGCTGCTCCTTTACCTCAGCCGGCCGCCCATCTTGCCCTTGCCACGTCCTTTGGCACTGAAAGGACGCAGAGAAACATGAATGCCAAATGCCAAGCACTGGGTTTAGGACAAGTGGAGGTCATTTAATTGCAGCACGCAGAAaatcaatagaaaaaaaacatgtatttttgtttttacagtattgATGTTAAATACCGGCATATTCTCTGTCTCAGACTTGTAAAGACATGAAATAAGTTTTGCTTAAATCAAAATTGTAATAATACGGCAAATGATATCACTAAAGCTTGAGTATTTGTCACGCTAATGACTGCAAATAAAAGTACAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117244 lncRNA downstream 103821 21245010 ~ 21251759 (-) True G87030
XR_005639947.1 lncRNA downstream 209067 21140507 ~ 21146513 (-) True LOC120563411
TU117182 lncRNA downstream 252201 21102630 ~ 21103379 (-) True G86976
TU117040 lncRNA downstream 446990 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 655943 20698815 ~ 20699637 (-) True G86761
TU117338 lncRNA upstream 588 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 93730 21462705 ~ 21466246 (-) True G87107
TU117371 lncRNA upstream 117557 21486532 ~ 21512528 (-) True G87120
TU117376 lncRNA upstream 177683 21546658 ~ 21549859 (-) True G87123
TU117411 lncRNA upstream 355948 21724923 ~ 21725658 (-) True G87148
XM_039808481.1 mRNA downstream 57981 21284373 ~ 21297599 (-) False LOC120563940
XM_039808482.1 mRNA downstream 63237 21284373 ~ 21292343 (-) False LOC120563940
XM_039808480.1 mRNA downstream 65686 21284373 ~ 21289894 (-) False LOC120563940
XM_039808484.1 mRNA downstream 65686 21284373 ~ 21289894 (-) False LOC120563940
XM_039808479.1 mRNA downstream 65687 21284373 ~ 21289893 (-) False LOC120563940
XM_039809749.1 mRNA upstream 556 21369531 ~ 21372509 (-) True dnajb9a
XM_039809950.1 mRNA upstream 357111 21726086 ~ 21734094 (-) False LOC120564741
XM_039809949.1 mRNA upstream 357111 21726086 ~ 21734088 (-) True LOC120564741
XM_039809952.1 mRNA upstream 357111 21726086 ~ 21734038 (-) False LOC120564741
XM_039810025.1 mRNA upstream 366409 21735384 ~ 21739344 (-) False LOC120564778
TU117029 other downstream 475942 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 526977 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 1096321 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1672663 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1783658 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 344067 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 366031 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 366031 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1320186 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1322073 22691048 ~ 22706196 (-) False parvg

Expression Profile