RNA id: XM_039809804.1


Basic Information

Item Value
RNA id XM_039809804.1
length 3320
RNA type mRNA
GC content 0.51
exon number 2
gene id lrrn3a
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 3799577 ~ 3825591 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctctctccatctctctgtcgctgtggagaggagaggagaggaaaggaaaggagacgTTGCTTCTTCAAAATACTCGAGGAAAACAGGAAAATAGCTGCTGGATGTTATCATGCAGCGCTGCACGCTTtaaacaaacgcacacacacaccaacacacacgcacacacacccaacacacacacacacacacacacacacacacacgctctgtGCCACTGCAGCCATGCCAGGAATACCTGCTGAATATCTGCTTCTGCTGCATGGGACTTGATGGATATCGCTTCTACTGATGGAAAGTGACACCGGTGACAGCGACGGAGGATAATAATGATGGAAAGCAGAGTGATTCCTCCCCAGCCGAAGCCACATTACTCAACCGCCCCTCTGCTGCACAGCGCCACTCCCTGAAGGATACACCCACCTTGACATATCGCAGCGCGCACCACAACCTGGCACCACAACCTGGCACCACAACCTGGCACCACAACCTGGCACGGACCGAACTGAAAGGTTGCCTCTCTTTTGCCAAGAGCTGAAAGACAACAGGAGCACAAAGCTTCGGGGACCAGGCGTCAGCAGAAATCCACTCCGTCTTGCTTGCAGTAACAAATGAGCCTTTATTTGTGAAGTTAAAAGTGCTAACAGCCGACTCCATAAGGGCCAATTACTGGCTGACGGGAATACAGGGGCCAAGATGAAGGAGACTGCAGTTGTGGCTTGTTTGCTGGCTGAGCTGTCTCTGGCTGCTTTTGCTCTGGCCTCTCAGGGGGCCGCTCACTGCCCTGCATTGTGTCGATGTGAGATACGACCCTGGTTCTCACCCAGCTCTATTTACACCGAGGCTGCCACCGTGGACTGTAACGATCTGGGCCTCTCGGTGCTACCGGAGAGACTCCCCTCGGAAACAgaagtgctgctgctgcagacgAACAACATTGTTAACGTGGAGAAGACTTTGGATTACTTGGACAACATCACCGAAATCGACTTGTCTCAGAACAACATTTCTTCGGTGGGCGATGTTTATCTGGGGTCTCTCCCCCAGCTGCTGTCACTCCACATGGAGGAGAACTGGATTCAGGAGCTATCGGACAGCTGCCTCGCTTCCTTTCCCAACCTCCAGGAGTTTTACGTTAACCACAACCTGATTTTCTCCATTACCCCCGGAGCATTCCAGGGCCTGAACAGGCTGCTGAGGCTCCATCTCAACTCCAATCGACTGACAAGCGTCAACAGCGAGTGGTTCCAGCATCTCCCCAGCCTGGAGATACTGATGCTGGGAGAAAACCCCATCATCGAGCTGTCGGACATGAACTTTAAACCCCTGGGGAACCTACGAAGCCTCGTGCTCGCCAAGATGAATTTGACCGAAATGCCGGACAATGCTTTTGTTGGTCTTGAAAGTTTGGAGAGCATCTCGTTTTTTGACAACCTGCTCAATCGAGTCCCCCAAGTGGCGTTGACTCGAGTCCAGAACCTGAAGTTCCTGGATTTGAATAAGAACCCGATTGAGAGGATCCAAAGAGGTGATTTCACGGACATGATGCATCTCAAGGAGCTCGGCATCAACAGCATGCCCGAGCTTGTATCAATCGACAGTTTTGCCCTCAACAACTTGCCCGAGCTGACAAAAATCGAGGCCACAAACAATCCCCGGCTGTCCTACATCCACCCGAGGGCCTTCCACAAGCTTCCCAGACTCGAGACTCTGATGCTGAACAGCAACGCTCTGAGCGCGATCCACCGCGGCACCGTGGAGTCCCTGCCCAACCTGCGAGAGGTCAGTCTGCACAGCAACCCTATCCGCTGCGACTGCGTCATCCGCTGGGTCAACATGAACAGGACCGCAGTTCGGTTTATGGAGCCGGACTCTTTGTACTGCGTCGAGCCCCCGGAGTACCAAGGCCAGCGCGTCCGACAGGTGCACTTCAGGGAGATGACAGAGATCTGCCTTCCCCTGATCTCACCTGGGAGTCTCCCGGAGCGCGTCGAAGTCAGAAAAGGGAGATCTGTGTCGCTGCACTGCCGGGCGTTTGGAGAACCGGAGCCTCAGATTACCTGGGTGACACCATCGGGCGACAGGGTCCTGCCTGGGAGCGTGTCTGATAAGTACTACATGCACCCCGAGGGAAGCTTCGATCTCTACGATGCCACGGAGCAGGAAGCGGGCTCGTACACCTGCATCGCCCACAATCTTGTCGGGGCAGACATCAAGTCCGTGCTGGTTGCGGTGGACGGATACGTTACCCAGCCTTCGAATCAACCTCTACATGTTTATATCACGTCTGTCCAGTCTCATTCTGTAAGGGTTTCCTGGGAGAGTGCAGGGGGTTTGGTATCGCAACTAAATTGGTCCGTTTTAGCCGACGGCAGCAGCCTCTCGGCGCCATTCGCAGCCAGGCTTCCCGCTGATGTCAAAGAGTACCGCATCAAGCAGCTGAAGCCTTCCACTCGCTACCAGGTTTGTGTTGGAGTCACTGCAGCACAGCCTGGATACAGCAGGGACTGTGTCAACGTGACCACAAAGGTGGCACTGATCCAAAGGGATAAAAGTGAGAACTGGGACAGTCTGGTGATGGCTACCTGCGCTGTGTTTTTCATCGTGGTGGCCGTGGCTTGCTCCGTGATCTATACGTCTCTGTACAGCCAAGTGTTTTACAGGAAACTGATAGCAGACCCGGCTGAAACGCTGCTGATTCCCAGCGCTCAttccttttcctctccttcttctGATTTCCTGGAATCTGGCGCGTCTGGGATCAAGGTGAGGGCCACTGTAATAGACTTACCGGACGACTCCATGTAAGAAACGTCCTTGTCCGGGAAAAGCACTTTGGGATTAAGCGAAGACGAAGAGTGATGGACACTGGACAATGTGATTTATGTGCTCTCTTTTCGAGACTTTTGATGGGACATTTTAAACTGGAACTCAGCTGGGTGGCATCAGAGCAGAaatgcaaacacatttacacaaatagCTAAAAGCAGAGACGATTTTGTATTTCAAACATTATAACAAGCTTAATCAGGCAGATATCTTGACTATAATCTACATGGCTACTGGTCAATCATGCAGTGCGACCGGAGTAAAGCACAGCGGGAACTTCTGTATTGAATACTTTGTTGAGACGGCTTTAATGTCTGCAAAAAGCATTTTATTTGCTGTTACATTAAACGGTGCCAAGCCAAGATAGTTTATaacggaggaggaggaaaaaaaaatattgttaatCTAGTGTACAATTTAACCGACTATAATGTAAACAATTTTatgaacaaatacattttttcattAAACCTGTGTGGTGTCTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110703 lncRNA downstream 5345 3788002 ~ 3794232 (-) True G82189
TU110696 lncRNA downstream 25572 3773433 ~ 3774005 (-) True G82184
TU110687 lncRNA downstream 75424 3680235 ~ 3724153 (-) True G82177
TU110686 lncRNA downstream 75424 3710717 ~ 3724153 (-) False G82177
TU110675 lncRNA downstream 119125 3622155 ~ 3680452 (-) False G82172
TU110717 lncRNA upstream 24079 3849670 ~ 3851935 (-) True G82198
TU110718 lncRNA upstream 24079 3849670 ~ 3851935 (-) False G82198
TU110725 lncRNA upstream 30735 3856326 ~ 3890274 (-) True G82202
TU110734 lncRNA upstream 53836 3879427 ~ 3914359 (-) False G82207
TU110735 lncRNA upstream 53836 3879427 ~ 3914359 (-) False G82207
XM_039807410.1 mRNA downstream 168762 3610411 ~ 3630815 (-) True znf277
XM_039808300.1 mRNA downstream 363272 3422286 ~ 3436305 (-) True ciao2a
XM_039809801.1 mRNA downstream 626420 3170771 ~ 3173157 (-) True rxfp3.3b
XM_039809710.1 mRNA downstream 669530 3112306 ~ 3130047 (-) False LOC120564581
XM_039808856.1 mRNA upstream 85453 3911044 ~ 3969786 (-) True LOC120564132
XM_039808859.1 mRNA upstream 156119 3981710 ~ 4010282 (-) True dus2
XM_039807492.1 mRNA upstream 193503 4019094 ~ 4060242 (-) True slc7a10b
XM_039809093.1 mRNA upstream 263093 4088684 ~ 4097476 (-) True LOC120564247
XM_039809099.1 mRNA upstream 300036 4125627 ~ 4127757 (-) True LOC120564250
TU110644 other downstream 221193 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 419049 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 861587 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1114337 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 1121064 2670315 ~ 2678513 (-) False G81726
TU110810 other upstream 451229 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 1178801 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 1655157 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 3462304 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 4749663 8575254 ~ 8575431 (-) True LOC120564825

Expression Profile