RNA id: XM_039809825.1


Basic Information

Item Value
RNA id XM_039809825.1
length 4928
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120564658
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14245220 ~ 14251969 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGAGCGTGCTTTAGCCCTGATGACATATTTATACCCTTTCCTTTTCCCtaattttttcagttttctttcttttcttttcttctcttctacACTCATATTCAagatcacatacagtacattatccACACCAGACGGATGTCTGTGAGTGTATGTGGGGGAACAGAACCAGCAGTAAGAGATGAtactgtgtgtggtgtggatGATGCCTCCGATTTAGGAGAACGGGATTGTGCAAACAGTCAAACTGTCAGATCAGTGCAGCGGCAGAGAGTGGGACAGTGGGGGTTGTCTCGAGGAGGTGGGGTCTGTCCCATGTGTCGACTGTCTGATGGAGAGAAGAGGGGCACAGCACAGAGTATGAAAGGACACAGAGTgctgcgcagagagagagactgcaggCATGCAGCGACACGGAGAAGCATGTATGTTTAAAGAGGCTGCAGCAGAGTGGGCAAATGCTGAGGTGTGTTAAGCATGAGATTCCCAGAGACCTGAGGTCAAAGATCTGTCAAGCATGTGATTGGACAACACCCCTCAAAACCTACAGCATGTGACTTTGCCGTGGAGTTTGTAGACCCTCACCATGCTCTCTCTGTGGAATCTTTATCTTCTTCTCCCCCTCTCCTTGCCTCTATCACTTCACGTCATAGCCTTCACTGGAGAAAATGTCAAGGAAACACAACAGCCAGTCACTGACACAGCAGTGCAGCATCTCACACAGCCCCCACAGAGACCTCATGGATCTGGTTTAGCACTGGGGAATCCCTTGTTTGGGACTGAGAATGTTGACCTCATGGGTCTACCTGTGAGTTGGTCCTTATCATCGTCTGAGGAATTAGATAGACAAGGTGTGATTGGTGAATACATTGATTTACAGGAGAGCACAGAGACATCGCTTTTGAATCCTAATGAGAAGGGACTTATCATATCCACACCCGTAGATACAGAAGATGCCATCTCCAAGGAGAGTGCACAACCAATAAGGTCTTCAGGAGGAGTACCAACTCAACGTACCCAGGAACAAACATTAAAGTATCAACCATCTGAGACAAGTACTGGATCTATATTGCATTCTACACATACTGCAGAGAACAAGCCACCATTCTCAGCCTCTCAGAATGAGACGACCAATAGCCAGTTACCTTTTCTTCTGTCTGGCTCATTTCCATCAGGCCAGGACTCCACTTCACCTCTGTCTGCTGGACCTGGGCCCAGCCCTGAGCGCACCACTCCACCAGTAGCCAGTTGGGGATGGACCACGTCCCCCTCTGTTATCACGCAGGGAGAGACACAAGAGGGGACTGTCCCAATGAAAGAGTCCGGAGATGGATTGTTTGATATTATGGGTCGTATTTTACACAGAGGAGCTGTCAGCATAGCGGCAGATAAAGATGGCTCCACGGATGATGACCTGCATCTCTCAAAGACCAGTGGCACACTCTTGCTCGATTGTAACACAGACACATCTGCCATACCCTGCAAAACATCAAACCAGTCTTGGACTCCCACCGACCCAGATGATGTTACTCCCAACGAGTCCCCGGGCCCCTCTCTGGATCTCAGCCCTGCCTTTTTCGTCCCTCTGTATTCGGACTGGAACTCTGCCCTCGCCACATGGGGATTTGCGTGGGAAGCACACGTCTATGGCCTGGGCTCTGTCTTTACTGTATTTGGCCTAATCTCTGTGGTCTGCCTGTTAGGTCTGCCCCTGCGCTGTCCCCCAGGAAGCCCCTACTTCACCCTGCTGCACTTGTTCCTCCTAGCATTTGCAGGAATCCAAGCTTTCTGTTTGCTCTATGATGCTTACAATCACCAAGATCGTCTTCCCCCTCTgggctctctgctgctctctgagCTGCCCTTCCCCTGTTTGATCTCAGCCTTCTCCCTGGCCTTCCTCCTTCTTTCCTTACGCTCACGCATGCATCTTTCACTCCCACTTGCTAATTCCACCTCGTTCTCAGCCTTGCCCAGACCTTGCCTGTTGCTGTGTATGTCCCTGTTGTATTCAGGGGTTTCTCTAGGGTGTGTTGGCATGCTCCAGCTCTTCCACAGCCTCCCCTCCGTGATCCTGCTATTCCCTCAgggtgtgtttgtatgtctcACTGTCTTTCTCTCATGCTCTTACCTCATCTTCTACTGCTTAATGCAattcaacacaaaacacatctaCAGGCTGAATGACAATGGAGAGAGTGGAGGATCTCCTGACGCAATGCAACCTGCAAGTTGCCCCTTTGCCAAAGCTGAGGACTGGGGTAGGGCAGCAGGAGCTGGAGTGGGGGCTTCGTTGTGTTTGTTAGGGTGCGGAGGCCTCCAGTTGTATGGGATCCTGCATGCCCTTGGTTTAGGTGGGGTTGATGGCTATGGGTTCCAGCCCTGGCCCTGGTGGGGCTTTCAAGTAGGCTGCAGGCTCTGTGAGGTTGGGGTGTGTCTAGGTTTGTCTCTCATTGGTTCACACCCTCTATTCTGTCACAACAACTCCTCTATCAAGACCATAACTCATCCCCGGCCAGGATCTTGGTCCCGCCTCTCCTGCAGCTCCCCTTCACGAGGACTCACCCTGCCCTCTCAGGGAGGGGTAGgttctcctgtcctctcctctcacGATTCTTGGTCTCAGGGTAAACAGGAAAAGCTGGTGGTCTGTGATGTCATCACTAAGGGACAGTCCGAGGCTCTTCCTCTTTTCTCAATGGTGGATCCTCCTGGAAATGGGCAAGATTGTGTCCCCAAGTCCAGCCAAACCCGGAGCACTTCACTACCTCTCCCTACACCCCCAAGCCCACCGCACAAGCCTAAGAGTGCAGTTGAGTCTCAGCTATCGTCACTGGATAGCCTAAGACAGGAGATTGACTCTACTGTGGACCTGCAGCCCCCATCTCCCATAGACTTGTCCCGCAGCATTGACCAGGCTCTTTTCAGTGAATCCCTGTTCTCAGACAGTATATTTGGTTTGCCAAGACTCTTCCATGCTTCTTCCAGCCTCTCTTTGAGCCCTCCTAGCCAAGGTTCATCAAAGCAAGGGCCTAGCTCTGTGGAAAATGCCCTATACCGAACCTCTTCCTGTGGTGATGTAGATCAAGAGAATGGACTGTCCAGTTTAAGACCTTCCCAGCCACATGGCTCTTTGACATCTCACAGCAAGCCACCAATGTCACCAGAGCAATGGGATTGGAAAGAGAGCATCTCTGGCTCAACCCATGGTCTGTGCAGCAATCCTAAGGAGAAAGGAAAACTGCGCTCACATTCCTGGGCAAACAGAGGTCAAAACTTTGCTCAGAGCAGCCTCCCACGAGCAATCCCCCACCTGTCTTACCACAGACGATACCAAACCCTGAGCTTAGCCTCCCAGGACAGTCATGGATCTGGCCGGCTGGCAGGGACTAAACACCTGAGTGAAAGCAAACAGCTGGAATGGGATATGGCTGTACAGGCAGAGTTTGTCAACGTGTGCAGACAAATTGACACTCTGAGTGTTTGCAGTGACACCATTGAATTATAGAAAGTTATAAAAGTCCAGTTGTGATTAAAATATGCACATGTCTTTGTACAGAAATAGCATACTCTGATTAGATGAAGGAATTAAATTGTACATCATTAAAGTTATACAGATGAAAATGATTACCTGAACTGATAAAAAGGGGAATGGACATTATTGATAAAATGTGTAGACCCAATTTATTTTCTATAAATACTATACTgttgatattatatatattcaaaACTGTTTTCAGCAACGCCACTAAGCTATTCTCTTTgcagtaatgtttttttaaataatggcaGTAGTCTAATTTTATTGCTCATTTCCTGCTCATACACATTTATGAATGTCAAGAATCAAATATATTGCAAAAGAGTGCAAAGCTTTCAAGACATTAACTTAAGCAGGAGTTTGAATATTTGTATAACTGACATGTtgagctttttttatttaaagctatCTTACAGAGAGAAACTGAATGGCATACACAGGTAAAGGAGAGCCTTCTTTAATAGTGAATGGACAAACAATATGGGCTCAAACAGTTTCATTGTACACCGTTGATGTGTGTTCAATAGTCAACGTGCTCAGAAGGATTTAATATATAATGAGTTAAGCCTCTTCCACTTTGGGATTGTACAGACACAATTTCATCACTGGTTAGCAGCCACAATACAATCAGCACCTTGTTGGGCATTTAGAGTTGGCAAACATGTACTTCATCATGGGAACAGACACTTGGCATCTAGTGCTTACCTCagaggattattattattattaatatttaagtGGGGTGTAATATACTTGGAAATTCAATGAAAATTCATATATACAAAGGATGAGTTTGTCTTTCATGTTTTTGAATTGCTTGTTTAGCCATTTAAGTGGTATCTTTGTTATTTTAGTAGTACGTACAGTCCAAGTTGCAATGtgagcttgttttttttgtttttttactaccAGTGGCAAACTGTGGCATTGTGTGCCAATGTTAGAACCTCTCACAGGCTCACAGAGGTTAAATCTTGAATATATTGCCCTCTAGTGGTAAtgagaaaaacaacactttttgcTTGATTGATTTCTGGAGATTTAACGAATCAAATCAAATGcctttgacaaaatatatatatgtaataccACAGATGTTGAGTACCTCCCAGACAAATAACAAATCACATTTAAAACTGATAAATCAACTTGAAAGAATGTTTTTGTCTACAATTCTATAAAGAAATAAATCTAACCCAGGCAATTGGTTTGTTACTACTCTTCTCCACTGACTCCAGAGCCCTATTTCAATAACTcaccatttaatttttttaaattctggccctgaaaaaagacaaataacTACTTATATTATGCATTATGGACAGACAATAACTATGTAATTAATATTGTGTTTTTGCTAAATAAATTTATGGAAGATAAAAACA

Function

GO:

id name namespace
GO:0017080 sodium channel regulator activity molecular_function
GO:0016247 channel regulator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114148 lncRNA downstream 4166 14240521 ~ 14241054 (-) True G84752
TU114147 lncRNA downstream 6769 14237582 ~ 14238451 (-) True G84751
TU114136 lncRNA downstream 8268 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA downstream 8268 14223250 ~ 14236952 (-) False LOC120564470
XR_005640108.1 lncRNA downstream 12690 14223197 ~ 14232530 (-) False LOC120564470
TU114158 lncRNA upstream 10735 14262703 ~ 14263115 (-) True G84760
TU114159 lncRNA upstream 11448 14263416 ~ 14263741 (-) True G84761
TU114161 lncRNA upstream 12757 14264725 ~ 14264986 (-) True G84762
XR_005640087.1 lncRNA upstream 31928 14283896 ~ 14284962 (-) True LOC120564348
TU114175 lncRNA upstream 113224 14365192 ~ 14365398 (-) True G84776
XM_039809479.1 mRNA downstream 47097 14110466 ~ 14198123 (-) False frmd4a
XM_039809470.1 mRNA downstream 60533 14110466 ~ 14184687 (-) False frmd4a
XM_039809484.1 mRNA downstream 60533 14110466 ~ 14184687 (-) False frmd4a
XM_039809471.1 mRNA downstream 60814 14110466 ~ 14184406 (-) False frmd4a
XM_039809469.1 mRNA downstream 60814 14110466 ~ 14184406 (-) False frmd4a
XM_039809531.1 mRNA upstream 21661 14273629 ~ 14274893 (-) True LOC120564497
XM_039809530.1 mRNA upstream 22337 14274305 ~ 14276077 (-) False LOC120564497
XM_039809493.1 mRNA upstream 211391 14463359 ~ 14480786 (-) False LOC120564472
XM_039809492.1 mRNA upstream 211391 14463359 ~ 14480786 (-) True LOC120564472
XM_039808182.1 mRNA upstream 249928 14501896 ~ 14558228 (-) True LOC120563775
TU114145 other downstream 8268 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 212005 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 627324 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1014125 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 2100674 12141523 ~ 12144546 (-) True G84123
TU114408 other upstream 249992 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 714487 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 814071 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1227014 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 1262810 15514778 ~ 15544082 (-) True G85133

Expression Profile