RNA id: XM_039809836.1


Basic Information

Item Value
RNA id XM_039809836.1
length 2706
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120564668
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10386325 ~ 10397440 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGGAGGTTTATAAGAGCACTTGAATGCGTTCTGAGTTTCCTGATACCCAGTCACTCGCCTGCTGTAAACAGACGGTGCTCAGCTCAACTCCGGGTGGATCCGACCAGAACCCGAACAGACTACCCAAAACCGCGATGGTCATCTACTGTCTATACAATGGCCACCATCGAAGACGGTAACACGAACACCTTCGGCCCGGAGCTGCCGGCCATGTTTGATGGCATGAAGTTGGCAGCGGTGGCAACTGTCCTCTACATCATTGTCCGCTGTCTGAACCTGAAGAGTACCACATCACCACCAGAGATCATCCACCAGGATACACTGCTCAGCCGCTACCTGTTCAAATCCTGCCCGATGCTGACCAAAGAATACATTCCTCCCTTATTGTGGGGTAAGAGTGGACATCTCCAGACCGCCCTGTATGGCAAGATGGGGCGTGTCAACACTCCAACACCCTGCGGGGTCCGGAAGTTCCTCCCAATGCAGGACGGGGCCACAGCGTCCTTTGACCTCTTTGAGGCTCGTGGAGACCACAGCACAGGAGaTGACATTACCATGGTAATCTGCCCTGGGATCGGTAACCATAGCGAGAAGAACTACATTCGGACCTTTGTGGATCACTCCCAGCAGCAGGGTTACCGCTGCGCGGTTCTCAACCACCTGGGTGCCCTGCCCAACATGGAGCTCACCTCTCCCCGCATGTTCACTTACGGTTGCACCTGGGAGTATGAGGCAATGGTGAGCAACATCAAACAAGCTTTTCCTCAGACGCTGCTGATTGTGGTGGGCTTCAGTCTGGGGGGAAACATTGTCTGTAAGTTTCTGGGCGAGAAACAATCCAACCAGGACCGAGTGCTCTGCTGCGTCACCGTCTGTCAGGGTTACAGTGCCCTCAGgGCCCAGGAAACCTTCCTTCAGTGGGACCAGTGCCGGAGGCTCTACAACTTTGTGTTGGCGGACAACATGAAGAAGCTCATCCTGTCACACAGGAGCACTTTGCTTGGCCTGAACTCCAGCAATATTTGTGACGCGGACCTTGGCAGACTGTACGCAGCCACGTCTCTGATGCAGATCGACGACAGCATCATGAGGAAATTCCACGGCTACAGCTCCTTGAAGGAGTACTACGAGAAGGAGAGCTGTGTGCACTACATGAAGAATGTCACTGTGCCTCTTCTCCTGGTAAACTCCTCGGACGACCCACTCGTTCATCAGTCACTTCTGGATATTCCACGCACGCTCGCAGAAAAGATGCCCAATGTGATATTCGTCCTGACCCAACACGGAGGCCACCTGGGCTTCTTTGAGGGAGCTGTGCTGTTACCTCAACCCCTCACCTGGATGGACAAGGTCATAGTGCAGTACACCAACGCCATGTGCCACTGGGAGAAGAACCTGCCGGCCTGCCAGAAGAGCAGCCACCATGACAGGAACTCATGCCTGCAGAGCACAGGGGTAACACAAAGTGGATAACATGCTATACATAGAAGTCTGGAGACAAAACAAGCGACCAAAACTTACGAAGACTTACATACTCTTCAGTACTAATGGCCTTAAAGTTTAGTAAGTCATTCTGGGAATTGAGGAAGTAACTAAACGGGTTAGAAAAGGCAAATTGGAAGTTGGTACACCAAGTTGTAAATTGAAACTCACATAAGATACCTGGAAATGTAACATGACCCCATGGTGAATTGGTCCTTCCTCTTGTTCCCAGTTAACCTCCAGTGTAACACGAGTTTACCCTCTGCTGGTTTTGGCAGCTGCTGCTTCTTGAGTCTGGAAAGCTGAGTGATATATTTAGGGTGTTGACCTTTTACCTGCATGTGTTTTCCTACACGAATTACTGCTGAGAAATTTCCCAGATACTCAAATATTCATAAGTCAGCTTACACACAAATTAGGCAGATATATAAAAACTGGAAATGTATCTTAGTGTGAAGGACATAGTCTGAAGCCTTAAACTCTCAACCATTATATACCTATAGGCCAACATCCGTTATATTTTGaagcattttatttaaaaagtcttTTGGAATTTAACTTGTAAAGTTTGCGACCAGATTTTAAGTGCCTTAATATAAATGTGAATCTGTAACAGATGTGGTTTCTGGCTACTCATGAGTCAATGAGCTACCTCTGATAAGCAGCATTATGACATGGTTTACGGTTTACAGTAGTGATTTCCTGTTCCTTAAAGTGTTCAGTCAAACTGTAaatttcatttcttttattttgtttcggTTTGTTTCCATCAAGAGAAGATTGCTGTTTTATTGTAGGAAAAGTCTGTTTAATAACACCCAGTTTGGTGTTATTTCTACTGCGTATATATAGAGGCATCATTTTTCCCAATTTGACCCCGGTTTTTCACTTTGCATTTCCATTGTGTGCAGTGGACCATCAGCTGGCAATGTTGCTGctgaccttcaaaataaaagaatcaGGGAgtcaggtttttaaaaaaaacgcagacagaaagaaaggctAATCTTTCTTTAATTGATTTTTCTAacatttctttgtgttgttgaATGGAAATATGGGCACTTCATACAAACTTGCGTGACATTGTACTACTCCAGGTGTCCCATCCCATGAATTGCTGCAACAGCATGAGGATGGCCAGATGGTATAATTGTGGACTCCTAATTTATGCACTTGGACCAAAGCACTCTTcacttttcaataaaaaaaagtagctCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112840 lncRNA downstream 14146 10368773 ~ 10372179 (-) True G83819
TU112839 lncRNA downstream 14146 10368863 ~ 10372179 (-) False G83819
TU112789 lncRNA downstream 18443 10361594 ~ 10367882 (-) True G83786
TU112787 lncRNA downstream 18443 10363800 ~ 10367882 (-) False G83786
TU112788 lncRNA downstream 18443 10363800 ~ 10367882 (-) False G83786
TU112893 lncRNA upstream 140391 10537831 ~ 10540661 (-) True G83854
TU112914 lncRNA upstream 308978 10706418 ~ 10713107 (-) False LOC120564603
TU112966 lncRNA upstream 425846 10823286 ~ 10900547 (-) False oaz2a
TU112963 lncRNA upstream 503216 10900656 ~ 10913212 (-) False oaz2a
TU112979 lncRNA upstream 527063 10924503 ~ 10925018 (-) True G83911
XM_039809350.1 mRNA downstream 206324 10174471 ~ 10180001 (-) False tdg.2
XM_039809349.1 mRNA downstream 206324 10174471 ~ 10180001 (-) False tdg.2
XM_039809347.1 mRNA downstream 206326 10174471 ~ 10179999 (-) True tdg.2
XM_039809226.1 mRNA downstream 212983 10166324 ~ 10173342 (-) False tdg.1
XM_039809225.1 mRNA downstream 212983 10166324 ~ 10173342 (-) True tdg.1
XM_039809905.1 mRNA upstream 51900 10449340 ~ 10467674 (-) False acanb
XM_039809904.1 mRNA upstream 51900 10449340 ~ 10467674 (-) True acanb
XM_039809210.1 mRNA upstream 149335 10546775 ~ 10632785 (-) False map1ab
XM_039809208.1 mRNA upstream 149335 10546775 ~ 10632785 (-) False map1ab
XM_039809209.1 mRNA upstream 149335 10546775 ~ 10632785 (-) False map1ab
XR_005640102.1 other downstream 206328 10174824 ~ 10179997 (-) False tdg.2
TU112643 other downstream 297725 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 312903 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 876254 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1810894 8575254 ~ 8575431 (-) True LOC120564825
TU112851 other upstream 30122 10427562 ~ 10432144 (-) True G83826
XR_005640086.1 other upstream 246592 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1490587 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1744083 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 2833177 13230617 ~ 13231095 (-) True G84530

Expression Profile