RNA id: XM_039809864.1


Basic Information

Item Value
RNA id XM_039809864.1
length 4976
RNA type mRNA
GC content 0.44
exon number 19
gene id sema3d
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14757979 ~ 14795130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacaaccagagtGCACCAAGAGTTCAAGAGCACTAGCGTGTGTTTGACTACAATTAAGGGGAGTGGAAATATTTTGGGGCAGTATTCAGTTTATCCATCCACGTTTCTTTCGGGCGGGTCGAGGTTTCGCAAGTGTCTATCCATACTTTCGGTTACTTTACTCTGTGCATCAGGCAATTAAGCAAAGTGACACTGCTGTCCACAGCGAGGACATGCGTTGCATGTGAGAAGACACGGAGTTGAATACGCAGGGTTGCAGAAAAGGACAGAGTGAAAACTGAACAAGACCACTCCACACACCATGAAGAAAGGGGACTCTGATAATCAGAGTCTGAATGAAGTTGGGGCTCTGCACTGCATGTCTGGCAGTAATTATGAGGGCAAAGGGAAGAGAATTAAGGTACCATCCCATCCAGGGGTCCCATTGGTGGTATTGATCTTGTTGGCCACCCTCCCTTTTGGATCAAGCATCATACAAAGTGTCCCCAGGGTTAAACTCAGCCACAGAGAACTGCTGCAAGCCGGCAGTGTATCTCTGTTTTTGGGCCCCTCCGATGGCCTCCACTCCCACTCGCTGCTGCTGGATGAGGAGAGAGGTCGTCTTCTGTTGGGAGCCAGAGATCACATCTACCTGCTTGACACTGACAATCTGGCCAGAGCCCCCAGAAAGGAGGATAGTGCTGTAAGAAATTCAAGTTTGAACAGGAGATGGAGTATCTCCGCCACACACTGTAAAGGTCCCAATCCCCAGATTCACTGGCCTGCTCCTCGGGACCGAGTGGATATGTGCAAACTGGCAGgcaaaaatgcaaatTTGGAGTGTGCTAACTTTGTCAGGGTCCTCCACAACTACAATCGAACACATGTCTATGCCTGTGGGACAGGATCCTTCCACCCCAACTGTGCTTTCATTGAAATCACTGGCCGCAGAGAGGATGGCGTGTTCCAACTGCTTTCTAGGACAGTGGAGTCTGGCAGATTGAAATGTCCTTTTGATCCCTCGCAGCCATTCACCTCAGTTCTCACAGATCAGTACCTGTATGCGGGCACATCATCAGATTTCCTGGGCAAAGACACAACTTTCACACGCTCCCTTGGCCCTCCACCTGACCAGCACTACATACGCACAGACATGTCTGAAGAATACTGGATCAATGAGGCCAGGTTTATATCTGCTCATCCCATTGCAGACACCTACAATCCAGATGATGATAAGATATACTTTTTCTTCCGCGAGGTGTCGTGGGAAGGCAACGGCAAGAGCATCCTGTCCCGAGTGGCTCGTGTGTGCAAGAATGATGTGGGTGGGCTGAGAAGTCTGACCAATAAATGGACCACCTTCCTCAAAACCAGGCTTGTGTGTTCTATCCCTGGACCAGATGGAGTGGACACACACTTTGATGAGCTCCAGGACATCTTTGTGCTCCCTACCAGAGATGACAAAAACCCCAAAGTGTATGCAGTCTTCACCACCTCCAGCTCAATTTTCCGTggctcagcagtgtgtgtgtacagcatGGCGGACATAAGGGCCGTGTTTAACGGACCTTACGCCCACAAGGAGGGGCCCGACCACCGATGGGTAGAATACGAGGGGAGGATACCGTATCCCCGTCCTGGAACGTGTCCCAGCAAGACATATGATCCAAGGATCAAGACCACCAAAGACTTCCCAGATGAGGTGGTCAGTTTTATTCGATTCCACCCTCTTATGTATCGCTCTGTCTACCCTCTGACTGGTCGACCCGTGTTCACGCGCGTCCGAGTGGACTACACCCTGACTCAGATCGTGGTGGACAGAGTTTTGACGGAGGATGGACAATATGAGGTCATGTTTCTGGGAACAGATGCCGGCTCAATTCTGAAGGTGGTGAGCATCACTCAGGAGAATTGGTCAACAGAGGAAGTGGTGCTTGAAGAACTTCAAGTTTTCCAGGTTCCCACTCCCATCCTCAGTATGGAGATGTCTTCTAAACAGCAACAGCTCTACGTGGGTTCAAATGAAGGGCTAGCCCAGGTTTCACTCAGTAGATGTCACATGTATGGCCAAGCCTGTGCTGAATGCTGCCTGGCACGAGACCCTTACTGCGCATGGGATGGACACACATGCTCACGATACGTCCCTGCATCGAAGAGGCGAGCCAGAAGACAGGACATCAAGCATGGAGACCCTGCCAGTCAGTGCTGGGACACAGAAGAAAGTCTTGTTGGTGGACGGGTGGAGGAGAGGGTCCTCTATGGGGTGCAGAGCAACTCCACCTTCCTCGAGTGTATCCCCAAATCTCAACAAGCTCTGATCCGGTGGTACATACAGAGACATGGATCTGAACGCAGGGAGGAGGTCAGGCTGGATGATCGCGTCATACACACAGATCGAGGTCTCCTGATTCGCTCCCTCCAAACCTCTGATGCTGGCGTGTATGTCTGCGTAGCTCAAGAGCACACACACTTCACCCACACTCTCCTCCGTCTCACGCTACAACTTGTTACACATGGACAACTGGATGGGAAGCCCAAGCCCAGTGAAGACCCCACGATGGAACTACGCCACAGCGTGGAGTCCCGTCAGCGTTATAAAGACTACCTGAGAGTGATGAGCTCTCCCTTTGGCTCTCTGGAGGAGTATTGCGATTCACTGTGGCTGGAGAAGAGGCCGACAAGGGTGCGAGGAAGAGGCTTAGGAGCTGGCAAATGGAAACATGTACAGGAAATGAAGAAGAGCAGGAACAGGAGACAACACAGATAGAGGGAGGAAGAGTGGGAAAAACAGGAGCGAGGGAGGGTGGTGAGGACAGCAAAGCAGTGAGGGGTGTGGTAAAAAAACATTCAGGGTTAGCTGTCTATATTCACCGGTTGGACGATGAAGCAGAATGTGACACATAACTGCAAAATTGCAATGACAGATCAATTCATGAGCAAGCAAAATCTAACTCAGAGTTACAATAATGGGGCGTGAAAGACTAACCCTGAAATATATAGAggtcaaaataaaattattgaAAAGATTTCGACAAGCAATTTTATGTAGCATTGGGTTGTGAATATCTAATTGCATTCATCTCTCCTGGATTGGAACATGACACAGGTCTTTCCTACAGCTTTCATCAGCTAAATACTGTAGTTTCCCCAGCAGTACAGACTGACGGTTATTAGAGGTGATAATTTGATGATATTGAAACATATAGTTGAATTAGTGAgattgggaaaaaaacaaaaaaaactaagagTTTGCTTGTGGTGATGACAATGCATTCATGTTGAATGACTGTAAATATGTATATACCATGTACAGGAGATACAGCATGCTCAATTTAGTCTTATTACTGATCTGTATACCTCAAATGATAATCATGTATCATGTTTGGGCTGACAAAATGACATATTTTTGTACAAACGTTTTACTCCTATTTACTGTAGGTTCAATAGatgttttcttttactgctgttttttaaagttatttaaataaatctgtCTTAGAGACTCTGTTCAATGAATTACTTACATTGTGTGAAGAGATTAATCAGTATACAGAAAATCTATTATTAATGAAAGTGCAGTTACAGGCACTCTCAAGCAAACAAGCAAGACATGGTCGAGAATGGGTTTGGGTTAGTTCAGCTCTCCTGATATAGCAACTCAAGTCCCTGTGCACTGTATGCATATGTCAGAATGATTCAGGACCAGCTGGTCTcttgtttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaaaagATAGAGGGAAAATGGGCATCTTCGGGAAACCATGCAAAATAGGAAAGTTTGTGACCAAACTAAGCAATTTACAGAATTCCTAGAATAACATGGTAAAGCTCGAACTCTCTCCAGAGGAGAACTTCAAAGTTGCTAGTACAAAAGTAGATAgcgttgtgtgcgtgtgtgttcatTACACTACAAGTTGTGTAAAACCAGTGCAGTCTTTCCTATGCTTTaatatgcttttttttggctACAGCTGCTGTGgagtttatattgtttatacatATTTATGTTGTCTGCCCATAGGTGATGTTTTATTGTACTGTTGATTCTGTAAGAAGTGGCAGGTTATTTAATTTATGTGGCTGTTTGTTGCACCCGTCACGGTGTCCttacactttttatttattgtcgGCCATTTTGTGTATTGTCTAAGTTTTGTCTCCTTCCTGGTTAATTCTTCTAAGGCTGCACTGAGGAAGGTGTTGTAGAATTGATAATCAGTTGTGTTGGTGTGGACATAAGGTGTCCGTGGTTTGACGTTGATGCATTGAAGTTgttttgtagcctaaatgttttctttaattaaatgGGTATAATCTATATTAGCCCACATATGTATATTCTTATACGAATATTTACCTTTTAAATTGTAGCACAGTAACTTTTACTCAGTTTTAACTAacctactttttacttttatctgagtacatttttactcaagtatttttacttttacttgtgtAAAATGCATTTAAAGGAACACTACTACTAAGTATTCTAGTACTCTTTTTCAACGCATTGAAAAACTTAATTCTAATGCTTAATATCTTAATAGCCATTTAATTCTTTTAATGATCTCATATTTAGGCCTCCCCTAATACATGACTGTTATTATCTCTTAGTGaaacacttattattattataaacacGTATTTTTTTGCCTTAACTTTTACAGAAACCACCATTCACCTCAATTCATTGTGCTTACTGTACTTGGCCTTTATACAAGTATGCACATACTAACAGCATTCAAGTCTCCCATTTTGTGTCTCCACAGTgatttctccatgtttcttgtAACAAAGACAATAAATATTTCAAGAACGTCA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114412 lncRNA downstream 190710 14558458 ~ 14567269 (-) True G84960
TU114175 lncRNA downstream 392581 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 473017 14283896 ~ 14284962 (-) True LOC120564348
TU114161 lncRNA downstream 492993 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 494238 14263416 ~ 14263741 (-) True G84761
XR_005640144.1 lncRNA upstream 12281 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 56590 14851720 ~ 14852023 (-) True G84971
TU114375 lncRNA upstream 158998 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 158998 14954128 ~ 14955407 (-) False G84948
TU114472 lncRNA upstream 262595 15057725 ~ 15057929 (-) True G85007
XM_039808785.1 mRNA downstream 49861 14683447 ~ 14708118 (-) True sema3ab
XM_039808787.1 mRNA downstream 90479 14642838 ~ 14667500 (-) False sema3e
XM_039808786.1 mRNA downstream 90480 14642838 ~ 14667499 (-) True sema3e
XM_039808184.1 mRNA downstream 125676 14617291 ~ 14632303 (-) True LOC120563776
XM_039807761.1 mRNA downstream 140621 14572731 ~ 14617358 (-) False LOC120563540
XM_039808414.1 mRNA upstream 108043 14903173 ~ 14919276 (-) True elapor2a
XM_039808185.1 mRNA upstream 166730 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
XM_039808419.1 mRNA upstream 178151 14973281 ~ 14990514 (-) True LOC120563915
XM_039808420.1 mRNA upstream 209171 15004301 ~ 15012816 (-) True LOC120563916
XM_039808233.1 mRNA upstream 256720 15051850 ~ 15057130 (-) True dnaja2b
TU114408 other downstream 250778 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 521027 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 724764 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1140083 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1526884 13230617 ~ 13231095 (-) True G84530
TU114449 other upstream 171325 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 270909 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 683852 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 719648 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1644244 16439374 ~ 16440965 (-) True G85321

Expression Profile