RNA id: XM_039809879.1


Basic Information

Item Value
RNA id XM_039809879.1
length 4407
RNA type mRNA
GC content 0.57
exon number 26
gene id rpgrip1l
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 1865668 ~ 1905302 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCCCCACAATTCTCTTCACTCGGCGCATGCGTAGTAGCATCATAACGACATGAACTGTTATGTTTTCAGTAGCAACCGTTACCTTGGACTGAATAAAGTCGTTTTAAAAGATTGAAATATGTCCACTCTGATTGATGAGACAGCAGCAGATGTGCCAGTCAGAGACTTCACAGTGAACCTGTCCCGACTCGCAGCAGAGTCATCGGTGTATCAAAATGCTCGGGCGCGACAGGATGTCTCGCGGGTGTCCAGGGAGGAGCTGGAGGACCGGTTCCTGCGCCTCCACGAGGAGACGCTGCTCCTCAAAcagcacattcacacacaggaCGACAAGATCAAGAAGCTGGGCACTAAGCTGATGAAGCTGGTGAAGGACCGGGGCCGTATGGAGCAGCTGGCGGCGGGCGGGCGGTCTCCGGCCCCCAGGGTCCGGGACGTGGAGATGGAGGAGATGATGGAGGATCTGCAGGAGAAAGTGAGGGGACTACAGGCGGAAAACGAGGGCCTGAAACAGCGCCTCCTGGTGGCCAAGCAGCAGCTCATCAACTCGCAGGGCAGGAGACCGGCGCCGTACGGCCGCGTCCCGTCACGGGTTAACTCGGGGGTCAGGAAGCAGCGGgactcctctccttctccaacAAGGCCCAAAAGCACCCGTTCGGAGGGAGGCGGGAGACCTCCGACCGGTCTCTTACCCCGATTCGGACACAGCCTGCTGGAGGAGGCGAGGGCCGAGGTCCGCAACCTGGAGAACGTGATCGAGCTCCAGCGGAGCCACATGGAGGAGATGGAGGCCGCGGCCGAGCTGCTGAGGGAAcagctgaggaggaaggaggctGAATATGAGGAGAGACTTCTGCAGGTCCGACAGCAACAGACCTCCAAACTCAGGTCGCATGTCGACGGCAACGTGACGATGATCAAACTGCAGAAGCAGCTGGCTGAACGGGCCAACGGTGTCACAGAGCTCGAGGGGCGATTTCTACAACTGCAAGAGagTCAGAGGACGCTGAAGCTGAGTCACGACGCAGCGATGCAGAAGGTGGATGAGCTGTCGGCTCAGCTGAAAGACGAGCGGCTGAAGAGTTTGGACCTGGAGAAACGGCTGCAGAGCTCCACCGTATCGGGGAAGAAGCTGGAGCAGctgcaggagagGATCAGTGAAGTGGAGCAGGAGCGAGATCTGCTGAAGGACAACAATGAGAAACTCATCAACAGTGCCTTCGACGTGTCTCGACAGCAGAAATGGCAGATCCAGGAGCAGCAGCTGAAGCTGCAGATCGCCCAGCTAGAGACTGCGCTGAAGGCCGACCTCGTTGACAAAAACGAAATCCTCGACAAGATTAAGGCTGAGAGAGACACAAATGAGAAGCTGACAGAAGAAAATCAGAAACTTCAAATCCAGATTCTGgagcagaagcagcagctggAGGAACTCAACGGCCGTTTGAAAGTCTACAGCAGGGAGAAGGACTACGACGCGGCCGAACTCACGGAGGCGCTGCTGCTCATTAAGAAGCGTAAAACCCAGAGGAGCGGCGATCTGGGCTTCCTGAAGGAGGTGGAGGACGTAGCGAGCGGCGGCGCTGGCGATGGCAGCACGGAGAGGGCCGTCCGAGAGCTGCGAGCCGCTCACGCCGAAACCATCCAGGAACTGGAGAAGACCAGAAACATCCTCAGCATGGAGAGCAAGATCAGCAAAGACTACAAGGCGGAGCTGGAGGTTGTGTTGAAGAAGATGGACGGTAACAAAGTGGAGTATGAGCAGAAGCTGGAGCGACAGGCTGCTCTGCTCGACACCAGGGCCGCCAAGATCAAGAAACTGGAAGCTCAGCTCCGAGACATTGCCTACGGCACCAAAACCTTCGTCTCCAAACAGGACGTCACCGAGGAAGACGAGGCCGACAGGTTTGATGAAAGTCTTCGCCTGGAGAGCGGAGAGAACCTTATGGAGCTTCAGATAGTCAGCGCCGCGCTGTCTCCGTCCGCCCTGCAGGCCCTGGGTGATGGCGAACCCTCCACCTTCTGCACCTACGCCTTCTATCACTTTGAGCTGCACGCCACGCCGGTGGCGGCGGGCCGGACGCCGGCGTACGGCTTCACGTCCCAGTACGTGGTGAGTGTGGACGAGCTCTTCCTGGAGTATCTGCAGCGAGGCTGCGTGAGCGTGGAGCTGCACCAGGCGCTCGGTCTGGACTGGAGGACGCTGGCCAGAGCGCAGATTAGGCTGCAGGCGCTCTTGGAGCGAGACGGGAAAGTCCACGGGACTGCGCCGCTGGTCGGAGCGTCCGATGATTCCCGGTCCTTTGGCTCCGTGGATTACTGGCTGCAGCTGAGGCTCCCGATGACAGAGACCATCCGTCTGTATAAAGAGAAGCTGAAGGCTGCGGGCTACAGCCACACCGCTTTGAACCAGGACGCACAGCCGCCTGGCGTCTGGAACGAGCTCTACGTCACGGTGCAACGCTGCAGAGACCTAAAGACGCCCAGACTCTCAGAGCAGCCGAGCCCCTACGTGGTTTACAAGTTCTTTGACTTCCCCGACTACCCGACCGACACCGTCCACGACTGCTACGAGCCGCGCTTCAACGACCTCAAGTCCTTCTCCATCCCGATGGACGCGGGTCTGGATCGCTACCTGAAGTCTGAGGTCCTTCGGCTCTACGTGTTCGACTacaaagaggagcagatggACACGTACGTGGGGAAGGCCGCCGTGCCTCTGGCGTCGCTTGCCCAGGGCGAAGAGATCAACGGTGTGTTTTTGCTGACGGATCCCTCCGGTCTCCCCGCCGGAAACATTGAAGTGACGCTGAAGTGGAAGTCCCCTTACCTCCCTCCACCCGGCTCCGTCGGGACTGTCGAAGAGCAAAAGTTCATCCcgaaagagaaagaaagcaagcaaacacaacagcacagagtggaggaaaagaagaaagagacacATGTTGCTGAGACGCCGCAAAAAGAAGACAAACACCTTTTTCATCAGCCCATCTCGCTCCCTACATCTGCTGCGTCTAAGGCCCCGCTGCCAAAACTCAGACAGAGGACCAAACTAAAGGACGGACCAGCTGCCAAAAAGGTCACGTTTATAGAAAGCTCAGCTACAGACGCCCAGGTTGGTGAGCGAGAGACGAGACAGACGCCAGTCTCACCTGTTGTGAAGGTTTTGTCCGAGGCGAGTCGGGCTGCTCAAAGCACcgcagaggaagaagaagaagaagaagagtctcACTTCTCTGAAGGTCAGCTGATCCCGGCCAGCTCTCAGTCGTTCTCCGACGACTCTGAAATCTCAGAGGAAATTACAGAAGATGTGGAGGCGTCCCCGAGAGATCCGAGTGAATCCACTCAGTCGGACAGCGATGACTGCATCGTTCACGGGCAGACGGCCGGGAGGAagCCCTCAGAGCGAGTTCTCCTGGAGGTGGTGTCCCTGAGCTTGCGGCCTGACTCTCGGGTGTCCCGGGACAGCAGCGTGGTGCGTCTGTTTGTGGAGTACTCTCTGCTGGATCTGCCCACCGAGGAAACGCCGCTGTCTCTCCCCAAACCCCCGCTGGGAAAGACCATCAGCTACAACTACAGCAAAGTCGTTCCTGTGGACGCCGAGTCCAACGCGGCGCGGCGGCAGCTGCTGAGGAGCGTCCTGCAGGGACGAAGCCCTCAGATGGAGAGAATTCGGTTCACGGTGGTGAGTGAGCcaccagaggaagaggagcaggagagggagtGTGAGGATGTGGGCGTGGCTTTCCTCAGGATCCCCGAAATCCTGGAGAGACAACGAGACCTGACGGAGACCAGCCTGGAtgTGTTGGACGTGGAGGACAGCAGCGAGGTCATCGGCAGTCTGACGGTGTCGGTGGAGGGACTGGAGGCTCTGCAGGCCATCATGGAGGAACAGGACCAGGAGCTTCCATCAGCACTCAACGTCACATGACTCACCCACAGAACTCGAGGTCACATGACTCTCCATCTCAGACACAGGACACGCCCACAGAGAGAAGGTGACACCAGACGCGCTGTGTGTCAGAAACTGAAACAAAGATCATGAGAAGTTCTTCATACCTTCAGGACCCAAACTCTGAGGacgggaaacactgatccacatgttagagaccaaacaactaatacaactcatccattcatccattcattcattcatccgttcatccattcatccgttcatccattcatccaggacATGATCCACACATTAATCCACAATCCCAAACATCTTGACTGAAAAAGTGACTTTCTGTCCGAGTTGTGTTGGCAGATCAACAGCTAGCATGTGGATGTGTcggtaacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaga

Function

GO: NA

KEGG:

id description
K16550 RPGRIP1L; protein fantom

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109891 lncRNA downstream 2688 1862499 ~ 1862980 (-) True G81609
TU109745 lncRNA downstream 96786 1246936 ~ 1768882 (-) False ambra1b
TU109746 lncRNA downstream 96786 1246936 ~ 1768882 (-) False ambra1b
TU109869 lncRNA downstream 148422 1708041 ~ 1717246 (-) True G81592
TU109853 lncRNA downstream 149077 1640720 ~ 1716591 (-) True G81581
TU109925 lncRNA upstream 29685 1934987 ~ 1935976 (-) False G81627
TU109926 lncRNA upstream 29685 1934987 ~ 1935976 (-) False G81627
TU109927 lncRNA upstream 29685 1934987 ~ 1935976 (-) True G81627
TU109947 lncRNA upstream 134307 2039609 ~ 2040563 (-) True G81643
TU109957 lncRNA upstream 201672 2106974 ~ 2119909 (-) False G81651
XM_039809167.1 mRNA downstream 5710 1789550 ~ 1859958 (-) True nox5
XM_039809171.1 mRNA downstream 38737 1824090 ~ 1826931 (-) True LOC120564321
XM_039809170.1 mRNA downstream 45148 1816911 ~ 1820520 (-) True LOC120564320
XM_039809169.1 mRNA downstream 70916 1791630 ~ 1794752 (-) True LOC120564319
XM_039808077.1 mRNA downstream 96758 1725007 ~ 1768910 (-) True ambra1b
XM_039808078.1 mRNA upstream 30786 1936088 ~ 1980407 (-) True LOC120563719
XM_039807778.1 mRNA upstream 109994 2015296 ~ 2019324 (-) True LOC120563551
XM_039807782.1 mRNA upstream 115702 2021004 ~ 2028583 (-) True LOC120563554
XM_039807780.1 mRNA upstream 187519 2092821 ~ 2100613 (-) False LOC120563553
XM_039807779.1 mRNA upstream 187519 2092821 ~ 2100477 (-) False LOC120563553
TU109743 other downstream 137927 1725152 ~ 1727741 (-) False ambra1b
TU109845 other downstream 200776 1613394 ~ 1664892 (-) True G81576
unassigned_transcript_366 other downstream 304943 1560654 ~ 1560725 (-) True trnae-uuc_58
unassigned_transcript_365 other downstream 305579 1560018 ~ 1560089 (-) True trnae-uuc_57
TU109840 other downstream 324194 1539964 ~ 1541474 (-) False kcnj11l
TU109967 other upstream 205319 2110621 ~ 2112849 (-) True G81655
unassigned_transcript_368 other upstream 539457 2444759 ~ 2444830 (-) True trnak-uuu_14
unassigned_transcript_369 other upstream 612060 2517362 ~ 2517433 (-) True trnae-uuc_60
unassigned_transcript_370 other upstream 625870 2531172 ~ 2531243 (-) True trnak-uuu_15
TU110061 other upstream 765013 2670315 ~ 2678513 (-) False G81726

Expression Profile