RNA id: XM_039809914.1


Basic Information

Item Value
RNA id XM_039809914.1
length 3503
RNA type mRNA
GC content 0.43
exon number 2
gene id avpr1aa
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23551853 ~ 23556076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAACTCGGAGACCAACGGGTTCCTCTCTGTGAGCATCACGCACAGTAGCTCCATATATGTAGCGGCACCTCGCAGCCCCTCTGGCACTGTATCTGCTAGGGCGCGCGCAGGGACAGTGCCATGCACACTCCTGACTATGAGTTTCTGAGCGGTGGGAACCAGTCTCTGGGTTTCAGTCCCTTTAATGACCGAACAATGGAAACGCTCGGAAACAACACCGTCCACCCGAATGGATCCGATCCGTTTGCGCGAAACGAAGAAGTGGCCCAAATCGAGATAATGGTCCTGAGCATCACCTTCGTGGTTGCTGTGATTGGGAATGTGAGCGTCCTGCTGGCAATGTACAACACTAAGAAGAAGATGTCGCGGATGCACCTTTTCATCAAACACCTCAGCCTGGCTGACCTGGTGGTCGCCTTCTTCCAGGTGCTGCCGCAGCTCTGCTGGAAGATCACCTTCCGCTTCTACGGTCCGGACTTTTTCTGCAGGATAGTCAAGCACCTACAGGTGATGGGGATGTTTGCGTCCACCTacatgatggtgatgatgaccCTGGACCGTTACATTGCCATCTGCCACCCTCTGAAAACCCTCCagcagcccaccaagcgctccTACATCATGATCATCTCCACGTGGATATGCAGCCTGGTGTTCAGCACTCCGCAGTACTTTATCTTCTCCCTTAGCGAGATCCAGAACGGCTCGAACATTAACGATTGCTGGGCGCACTTTATCGAGCCGTGGGGCGCCAAGGCGTACATCACCTGGATAACTGTGGGCATCTTTCTCGTGCCCGTGGTAATTCTCATGATGTGCTACGGATTCATCTGCCACAGCATATGgaaaaatatcaaatataaGAAAAGGAAATCGACGGATGGTGTTGCGAACAAGAACGGGCTGATTGGGAAGAATTCAGTCAGCAGCATTACAACTATATCAAGAGCCAAACTGAGGACTGTTAAGATGacttttgtgattgttttggcGTACACTGTTTGCTGGGCTCCGTTTTTCACAGTGCAGATGTGGTCGGTGTGGGATGAAAACTTTCAGTGGGCTGATTCTGAGAACACAGCAGTGACTCTGTCTGCACTCCTTGCCAGTCTCAACAGCTGCTGTAACCCGTGGATATACATGGTCTTCAGCGGCCACCTCCTCCAGGATTTTGTGCACTGCCTCTCTTGCTGCCTCAAAATGAACCCTGACTTCAAGAAGGAGGACTCAGACAGCAGTCTCCGCAGAACAACATTGCTGACAAAGATGGCCAATCGGAGCCCTACGGGTAGTTCGAGCAACTGGCGAGAGATGGACAATTCTCCCAAATCTTCCATTCAGGCGGAGTAAACTTGCAGCCAGACAACTCTGTTTACTGGGGTGGGAATGAAAACATGTCTGGGAGTGGCATCAAGTTACACATACAGCATCAACTCATCTTAACTTTGGGCATGTATGACAGTGACTGAAATACCCCCAAAGTCCAAAACTATAAAGCAAATTAAGCTTTTTGCATATGAATCAGGAGACAAGAGGGAAGTCGTGTTGACTGAGAATTTGCAACAAGGACAGTCAATATGGACACATTACCTGTGTTTTTTGCCTGATTCTGCATGCAAAcgtgttcttttcttttacgTAACCACagcaaaaaatatttgaaaaaacactgggaaaaagaagagaaattcCAAGGTTTTACTTCTAAGTTATCAAGCTCATTACAATTGTTAGTATAATCACTAGATGctgacaattattattttacataattttgTTGAAACAGTTTCAACAAATTCAACAGTCCCAAGTAGTCAAGCTGATTTTTAGAGTCCCAACATGATTcctttttgatacattttgaagagAAAAACACTTTTCCAGGAATACTGCTTTTACTAGTGGTTAGGTTTCTCTTCAGTGCTGCCGAACACCCTGTCCTGCTAAGAGTGTTTACAAAGATAAAACTCACATAGCAGCCAGAAATGCGTGCTGGTGAAAATGACTCCTCCAGACCGCACGTTTCTAAGTAACTGAGGCAGTCACCTCACCCTTTGTTTAGCTttccattttgttgtttttctcagaACCACATTTTAGTGGCTTATGTAAAAAGAAACCTTTCCTTTTGAcctatcataaaaaaaaaagaaaaataatgggTGTGGGGTTTAGACTACATCTTTTAGTCAGGCCGTTGCGTGCATCCACATTTTCCCCATTATTTCATGTTGCAGCTGGCAGTTATTTGTGTGGGTCCCTAACGACTGGCTTTCATTTCTGTTCAGTGGAGGCAGATGGGATCACCTTGAAAATAGCAGGACAttcacctacagacacacacacacacacacacacacacacatagtgtaGGGGGGCGGTGGGTGTTTCACAGTTGGAGGAGTCTACCTACCGACCCGCACACCCATCCCACGGCTTTCACAAAATGTTGGGGAGAAGCTCACACATTCCACACACTCTACGTCAACACATttcctgattttttttctgacatccTGCACCATTGGGGGTGGTCTGTTTTTTTGGCTTCATTTGCACTCCAGACAAAAACAATCTCCTGCACATTAATGCGATGTGCATGTGGACAGTAACGGTTGTCAGACCAACATGAGAACATGTACGTTATGATGTATGAAGACATTTCTATCTGACTGTATGGTATATTTGTACATAAAAGGCACTTAAATATCTGTATATAGGAATAATATATGTAAATCTGTTCAACATGATTTATGTTTGTCTGTAATGGCTtgtgtacataaaaaaaaaatctaaatatactatacatatatgTTGAAATATACATATTTATGCACTGAATACTACACTGGCTTTGTCTCCTGTTTTCACAACCACGGCACGGATGGTTTCACTTGCTTTGTTTGTGCTTCATGCAGTTGCTGCACAGAAATCTCTGGTGTTACATTTGCTAAAAAATTGAGCAATTCTGAACTTATATCTCTTGCCAATCTAAGCAATAATCACCTGCCAAGCTCTGGGATGATGCCGTTATTATGATGTCTAAAATAATGTGAAAcaaaatagttctgttaaaGGGAGGAAAGCTGCCCACCCCTTCATaacttaaaatatatacagacaATGTAATAGCTTGTAAAGCTGTTGAATGGAAATGTATCTGTACCAATAAAATCTAAACAAAGAAAGACAGATATCTCGAAACAAGGGCAAATAAAACCATATCTGCATGGCTCCATTACACTTTAGaaagaaaatactttttatacTGTAATTTTTCAATGACGTCTATTAGACTCCATAAGGAGTACAACATGATTTAATTTGATTATTTAATCTATCTAAATCTTGTCTAATTTACTCATCACATGATTCAGTTTCTTGCTGAAAAATAGTGTTACACCTCATGAAATCTTAATTGTGTAATGTAATAAGGCAGTGGTATTACTTCATCCAGCGACTCTTGTAGTCTTTATTGCATCATTAAATAATTTCAACGTCA

Function

GO: NA

KEGG:

id description
K04226 AVPR1A; arginine vasopressin receptor 1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117898 lncRNA downstream 134000 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 313321 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 327212 23198588 ~ 23224641 (-) True LOC120563856
XR_005640017.1 lncRNA downstream 334715 23198572 ~ 23217138 (-) False LOC120563856
TU117838 lncRNA downstream 402509 23149119 ~ 23149344 (-) True G87464
TU118029 lncRNA upstream 73650 23629726 ~ 23630285 (-) True G87596
TU118056 lncRNA upstream 124672 23680748 ~ 23737505 (-) True G87614
TU118160 lncRNA upstream 481808 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 486382 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 802917 24358993 ~ 24359284 (-) True G87733
XM_039808562.1 mRNA downstream 14328 23503797 ~ 23537525 (-) True ppm1h
XM_039808563.1 mRNA downstream 14329 23503797 ~ 23537524 (-) False ppm1h
XM_039809707.1 mRNA downstream 129396 23411510 ~ 23422457 (-) True LOC120564579
XM_039808895.1 mRNA downstream 144184 23376581 ~ 23407669 (-) False fbln1
XM_039808896.1 mRNA downstream 144184 23391490 ~ 23407669 (-) True fbln1
XM_039807477.1 mRNA upstream 21502 23577578 ~ 23584567 (-) False LOC120563353
XM_039807479.1 mRNA upstream 21502 23577578 ~ 23584567 (-) False LOC120563353
XM_039807478.1 mRNA upstream 21502 23577578 ~ 23584567 (-) False LOC120563353
XM_039807476.1 mRNA upstream 21502 23577578 ~ 23584567 (-) True LOC120563353
XM_039808217.1 mRNA upstream 91305 23647381 ~ 23650377 (-) True LOC120563807
TU117944 other downstream 53194 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 845657 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 845657 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1812525 21735006 ~ 21739328 (-) True LOC120564778
TU118073 other upstream 182906 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 349026 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 353093 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 353093 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 359758 23915834 ~ 23915906 (-) True trnar-acg_18

Expression Profile