RNA id: XM_039809943.1


Basic Information

Item Value
RNA id XM_039809943.1
length 2875
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120564736
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 24765416 ~ 24894803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCCTTGAAGTAGAAGGATCCGATGCAACCACAACCACAGCATCTAAAGTTTTGAACAACAGGATGTGAATGGATGGCCCACTCGATCCCGTATGTGTCTGAGCagaaacacaaccacacagaggATTAGAGTGAGAGAGGATCGGGCCGTCACATCCAGATGCTGCAAATCTGCTCCCTGCCTCACATGTGAATAGggACAGCTTTATGGTGGATTGGAAGTTAACATGAGGATGACCAGAACCCCTTGGAACTGTGATTGAATTGGCAGTGAGCCCAAATCCTCATTCCAAAGAGTGGAAGACCAGTCAATAAATTATGAATGTTAAACAAGATGACCTcctctcagcagcagcagatgatgCGAGGTCCTAGGTGGAACCGGGCCTTGTCCGACCCTTTGTTTGTGGTGCTTCTGGCCCTGCAACTGCTGGTGGTGGCAGGGCTGGTACGTGCTCAGACATGCCCCTCTGTCTGCTCCTGTAGTAACCAGTTCAGCAAAGTCATCTGCACCCGACGAGGTTTGCGGGAAGTCCCTGATGGCATCTCTACCAACACACGCTACCTGAATCTGCAAGAAAATCTCATTCAGGTCATAAAGGTGGACAGCTTCAAGCACCTAAGACATCTGGAGATCCTGCAGCTGAGCAAAAACCACATACGCAAAATTGAGCTGGGGGCCTTCAATGGACTGGCCAGCCTCAATACCTTGGAGCTTTTTGATAACCGCCTCACCACTATCCCAAACGGGGCATTTGAGTACCTGTCCAAACTAAAGGAGCTTTGGCTGAGGAATAACCCCATCGAGAGCATTCCCTCCTATGCTTTTAACAGAGTGCCCTCGTTAAGGCGTTTGGACCTTGGGGAGCTCAAACGGCTCTCCTACATATCTGAGGGGGCCTTTGAAGGGCTGAGCAACCTGCGCTACTTAAATCTGGGAATGTGCAATCTGAAGGAAATTCCCAACCTTATTCCCCTGGTGAAGCTGGATGAACTGGAGATGTCGGGGAACCAGCTAGCTGTCATCCGACCTGGCTCTTTTAAAGGGCTCATCCATTTGCAGAAGCTATGGATGATGCATGCACAGATCCAGACCATAgaaaggaactcttttgatgacctGCAGTCACTAGTGGAGCTCAATCTAGCCCATAACAACCTTACCCTCTTGCCCCATGATCTCTTCACTCCTTTACATCACCTGGAGAGGGTGCACTTGCACCACAACCCGTGGAATTGTAACTGTGACATACTCTGGCTAAGCTGGTGGCTTAAGGAGATGGTGCCAGCAAACACCAGCTGCTGTGCCCGCTGCAGCTCACCAACCCAGCATAAGGGACGATACATTGGCGAGTTGGACCAGAActactttcactgttatgctcCTGTTATTGTGGAGCCTCCTGCGGATCTAAATGTGACAGAGGGAAGCGCTGCAGAGTTGAAATGCAGAGCCAGCTCATTGACCTCTGTAAGCTGGATTACACCCAATGGTTCCATCATGACACACGGTGCTTACAAGATCAGAATCTCCGTGCTGAATGACGGCACTCTGAACTTCACCAATGTTACCATGCAGGACACAGGCACATACACATGTATGGTCAGTAATTCTGCAGGTAACACAACAGCATCTGCCACACTCAATGTGTCCTCTACAGAGAACAGCAGCTTCAGTTACTTCACCACAGTGACAGTGGAGACCATAGAAACGCCACATAATGAAGGCTTCACCACCGCTGTGCAACAGAAGGTAGGCCCCACACCCTCTGCTGGTACATGGGAGTCTGTTTCACCCACCTCTACAACTACCACCACAGTCCGGACCCCGCTCTCCACCCGCGCCACAGAGAAGACTTACACAATCCCTGTCACAGAGCTGGGTGGGGAGGGCTCGCTGAACGGCTTGGATGAGGTAATGAAGACGACCAAGATCATCATTGGCTGCTTTGTTGCGATCACACTAATGGCAGCGGTCATGCTAATCATCTTCTACAAGATGCGCAAACAGCACCACCAGCAGAACCACCACGCACCCACACGCACCATTGAGATCATCAATGTGGACGAGGACTGTGTAACAGGAGGCCCAGGCATGGAGGGCCACCTGACCCTGCCTCCTCTTGAGCACGAGCACCTCAACCACTATAACACCTATAAGACTGCATACAACCATGCCTCCACGATCAACTCCATACACAGCTCAGCGCACGAACCTTTGTTAATCCGCGCCAGCTCAAAAGACAATGTACAAGAGACCCAAATCtaatactttttttcaaaatgagaCATTATAAAACTGATGGAATTACATAAAGACATTACTGACAGGACATAACTGACAATTGGTTGAGAGAACTATGGCTCAAACATAGAAGAACAGACTTGTGTGTTTGGCAAATCAGTGGCTGGTGATGTTTATTCAATGACTTTGGGAATTAGGGTATGTCTACTGTTTCAAAAAGTGTCTTTACAAAACagaagttatttatttaagaaaaaaactatTGTGGTTAAATCAAGAAAAAACTGTATTCTGCAATTATTTTTTCAGCActtaattcatgtttttttcacctTCCTCTCATTTCATGGGATTGGTTTACTAATATGCATTCAAACTCTGTTTGAAGACATCTGTTGAAGAAAAActcctgacatttttttttttttcttatttggtAAACTGCATTCTTTGGATCTGATGAGATAGTAACCTCATTTCCCCCATGTATCAAAGGAATTTTCTCCAGCTGTAGATTAAGTGATGAAATATTTTGTGACCATCTATAACTGAGATAAATTGAACACTTGTTACAATGAGtaactgtctgacaacattttATCTGTCCCATACATGTTAGGCACTCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639948.1 lncRNA downstream 83680 24676596 ~ 24681736 (-) True LOC120563413
TU118236 lncRNA downstream 124691 24639857 ~ 24640725 (-) True G87767
TU118234 lncRNA downstream 125663 24639005 ~ 24639753 (-) True G87765
TU118231 lncRNA downstream 153644 24611425 ~ 24611772 (-) True G87762
TU118229 lncRNA downstream 155732 24609434 ~ 24609684 (-) True G87760
TU118261 lncRNA upstream 10690 24905493 ~ 24905774 (-) True G87790
XR_005639970.1 lncRNA upstream 167522 25062325 ~ 25063967 (-) True LOC120563511
TU118285 lncRNA upstream 179279 25074082 ~ 25075458 (-) False LOC120564386
XR_005640092.1 lncRNA upstream 179744 25074547 ~ 25075467 (-) True LOC120564386
XR_005640098.1 lncRNA upstream 217265 25112068 ~ 25114245 (-) False LOC120564398
XM_039808218.1 mRNA downstream 377167 24383761 ~ 24388249 (-) True LOC120563810
XM_039807602.1 mRNA downstream 545073 24161577 ~ 24220343 (-) False rag2
XM_039807601.1 mRNA downstream 572239 24161577 ~ 24193177 (-) False rag2
XM_039807599.1 mRNA downstream 600376 24161577 ~ 24165040 (-) True rag2
XM_039807600.1 mRNA downstream 600399 24161577 ~ 24165017 (-) False rag2
XM_039808847.1 mRNA upstream 367438 25262241 ~ 25278700 (-) True slc1a2b
XM_039808846.1 mRNA upstream 367438 25262241 ~ 25278473 (-) False slc1a2b
XM_039808843.1 mRNA upstream 374081 25268884 ~ 25278473 (-) False slc1a2b
XM_039808844.1 mRNA upstream 374310 25269113 ~ 25293957 (-) False slc1a2b
XM_039808849.1 mRNA upstream 408033 25302836 ~ 25387312 (-) False pamr1
XR_005640032.1 other downstream 849214 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 849214 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 849510 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 860243 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 1024226 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 169949 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 701550 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 1779040 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 2118434 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 2329249 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile