RNA id: XM_039809949.1


Basic Information

Item Value
RNA id XM_039809949.1
length 2144
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120564741
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21726086 ~ 21734094 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTAAACTTTGGTTGGAGAAATGGTTGATCAAACGAAACACGTGTAACGTTAACCGATGTGGGTGGGGCGGAAAACTGTAAACACCAACTGACTGTGCTATTCGACTCTAGCTTCTGACTTGATTTATGAGATAGATTGTTACTAGCTGGTAGAACTTCATCAGATGGTAGCTGAGATCAACAAAAATGTTCCGTTAGCGCATAAAACTTGAAACGCAAAATGCGATGCTATCTTCAAGCATTTCTCCTGTGCATGGTCTTCACCTTCTTTTCACTGTTGTATGTGTTCAATCAACTCGCCTCCACCTTGGAGGACAGAGACGACTGGAACCTGAAAGAACAGGGGATACCCGACAGGCGCAGTCATGACTATGGGCATCTTCTCAGGAAAAGGCCAGGACTGACAGGCCTTCGAGACCGCGAAGAAGAGCTTGACAGGTGTAAATCACTGTCAGTTTCTTACTGGAATCCATATTGGAGACTACCTGCTGATGTTTGTGGAGTGAACTGCTTATTGGATTCATCTCTTAGAGAGAGGTCAGGCTCTGCAGTCAAGGAACATAGTGATGAAAGAAGTCACCTGGCTGTGGTGGCCTGTGGCCCCAGGCTAGAGGAGACTCTTACCATGTTGAAGTCTGCTGTTCTCCTCAGCAAAAAGCCTCTGCACTTTTACGTCTTTGCTGAGGATGATCTACATGACCGCTTCAGAAATGCTCTGGACTCCTGGCCCAGGACTGTTCAGACCAAGTTTAACTTCACCATCTACCCCATCACTTTCCCCAAGGAGAATGTGAAGGAGTGGAAGAAGCTCTTCAAACCATGTGCCTCTCAGAGGCTCTTCCTGCCActgatcctaAAGGAGGTGGATTCTTTGCTCTATGTGGACACAGATATCATTTTTTTGCAGCCAGTAGAGGACATCTGGGCCCTTTTTTCTCAGTTCAAATCGAGCCACTTAGCTGCCATGGCTCCAGAGCACGAGGAGCCACGCATTGGCTGGTACAACCGTTTTGCCCGCCATCCTTACTATGGCAAGACAGGAATCAACTCAGGGGTCATGCTCATGAACATGACGCGCCTCAGGGAGAAATCCTTTAAGAATGACATGACAATAGTTGCACTGAAGTGGGAGGAAATTCTGATGCCCCTTCTCCAGAAGTATAAACTCAATATCACCTGGGGTGACCAGGACCTTCTTAATATCATATTTCACCATAACCCAGAAAGCCTATATGTGTTCCCCTGCCAGTGGAACTACCGTCCAGACCATTGTATCTATGGCAGCAACTGTCAACAGGCTGATCAGGAAGGTGTCTTCATTCTCCACGGTAACAGGGGAGTTTACCATGATGACAAGCAGCCTGCGTTTCGAGCCGTCTACGAGGCCATCCAAAAGTACACATTTGGTGAGGACATGGAGACCTCACTGCTTCAGCCGCTGGAAGCGTCGCTACAGGCAACCACAAATACCTACTGTGGAAGAGCCAGTCACCTGTTCACGAAGAAGTTAAAACAGAGCATCATGTCTGTTCAACAAGATGCCGCACAGAGAAGATGAGCAGGACAACACTCTTATATCACTGATATCATGATTAGTGTCTTAATTTCTCTCTGGAAGTAAATACTTAAATGTAAGACACTCCTGTGAAGACAGTGAGCTggatgacaaacacacacaggtcagcTCTGAACGTTTATCGGTTTACAAACTGCATATCAAGACTGGAAATGGGGAAGGGTAATCTGTTGAACAGGTTATATTTTCTATTCTTAAGTGAAGCCAATGTTGGTACATATCTGTCCAATGAACACACAATCAGGTCACATATGCTATCACGCCATATGGGGGAAAATGCACCGACACTTTTTAGAAAGAACTTACAATCACTTTATACAATTGTCTAAGGACTTTGGGGGAAGATGAATGCAGCAGGGTACTTACATATGTACTCTTATCAAGATTATTTTATTAGAGTTTATAATTTTGCATACAGGTTTTGTACTAGAGTTTTTGTCACTGCAGTATATCATGGAAAAGGGTTatcttcatgttttttttaagtaagtgtcacatcttttttaaacaaaacaaatgctCATTAAGAATACTtcaaacatatacagtacaggccaaaagtttgga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117411 lncRNA downstream 428 21724923 ~ 21725658 (-) True G87148
TU117376 lncRNA downstream 176227 21546658 ~ 21549859 (-) True G87123
TU117371 lncRNA downstream 213558 21486532 ~ 21512528 (-) True G87120
TU117350 lncRNA downstream 259840 21462705 ~ 21466246 (-) True G87107
TU117338 lncRNA downstream 355428 21369563 ~ 21370658 (-) False dnajb9a
TU117515 lncRNA upstream 271411 22005499 ~ 22008395 (-) True G87232
TU117537 lncRNA upstream 336870 22070958 ~ 22082538 (-) True G87249
TU117542 lncRNA upstream 371792 22105880 ~ 22106255 (-) True G87254
TU117622 lncRNA upstream 553856 22287944 ~ 22355196 (-) True G87320
TU117629 lncRNA upstream 616304 22350392 ~ 22366978 (-) False LOC120564428
XM_039809749.1 mRNA downstream 353577 21369531 ~ 21372509 (-) True dnajb9a
XM_039809744.1 mRNA downstream 357110 21355580 ~ 21368976 (-) False dnm1l
XM_039810025.1 mRNA upstream 1296 21735384 ~ 21739344 (-) False LOC120564778
XM_039809867.1 mRNA upstream 31594 21765682 ~ 21793881 (-) False prickle1a
XM_039809868.1 mRNA upstream 31594 21765682 ~ 21793881 (-) True prickle1a
XM_039809869.1 mRNA upstream 31594 21765682 ~ 21778750 (-) False prickle1a
XM_039807628.1 mRNA upstream 140885 21874973 ~ 21961067 (-) True LOC120563465
TU117396 other downstream 12532 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 846448 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 897483 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 1466827 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 2043169 19682846 ~ 19682917 (-) True trnap-agg_7
TU117418 other upstream 918 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 918 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 955073 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 956960 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 1760242 23494330 ~ 23498659 (-) True G87538

Expression Profile