RNA id: XM_039809960.1


Basic Information

Item Value
RNA id XM_039809960.1
length 1852
RNA type mRNA
GC content 0.52
exon number 14
gene id ptdss2
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23696033 ~ 23733655 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGTGCCCATGTGATGTGTGTCTGGAGTGTAGCCTGCACTGTGTATGGTCTAGAGCGGATTGTCTGTTGCTGTAGAATCAGTCTCCACTCTCCAGGCGAAGTGTAACACAGTTTACCTCtaaattgtttttctttctacTAGCTAACACGGATTTCAAACGTTTGTACTGATGTAGCGTTAGCAGCTCCAGAACTCATCCGGATTTCAGTCAGTAATCCCAAAAATCCAACTGGATGCTGACAGTCATTTGGGTGGGGCTGACGCGGATGACAGTACAAGGGAGCAGAGCCCAGGGATAAGCCAAACCGCACAGCATCAGTTTAAAGCAACAAGGTCAGTGGGGTTGGTAAAGCCATGACCAAGCCCGAGTCGAAGAAAAGCGGCGTGACCGCGATCAACGTTACCGGCAAGTGCGCCACATCCGCCGCCGAGCAGGTCAACAACGGTTCAGTCGAGCCGGACTGTCCGGATCAAAGCACACATATCAAATCTAATGTGACGAAGCAGACTTCCAAGGAGAGCATGCATCGGAGAAACACGGAGTGTGAAGTATATGACGACGGGACCAACACCTTTTTCTGGCGAGCCCATACTGTGACCGTGCTGTTCATTCTTACCTGTGCTCTGGTCTACGTCACGCTGTTGGAAGAAACCCCCCAGGACACGGCCTACAACACTAAGAGGGGGATTGTGGCAAGCATTCTGGTGTTCCTCTGTTTTGGAGTGACACAAGCCAAAGATGGACCCTTCACCAGACCACATCCAGCTTACTGGAGGTTCTGGCTTTGTGTCACTGTCGTCTACGAGCTGTTCCTCATCTTCATCCTGTTCCAGACGGTGCATGATGGACGACAGTTCATGAAGTACATTGACCCCAAGCTTGGGGTACCGCTCCCTGAGCGGGACTATGGAGGAAACTGCCTCATTTACGATCCAGGCAACACCACCGACCCCTTCCACAACATCTGGGACAAGATGGATGGCTTTGTTCCAGCTCACTTCCTCGGATGGTATATCAAGacTCTGATGATTCGGGATTGGTGGATGTGTATGATCATCAGTGTCATGTTTGAGTTCCTGGAATACAGCCTGGAGCACCAGTTACCTAACTTCTCAGAGTGCTGGTGGGACCATTGGATCATGGATGTGTTGGTGTGTAACGGTCTGGGGATCTACTGTGGCATGAAGACCCTGGGCTGGTTGTCAATGAAGCCCTACCAGTGGCAGGGCCTGTGGAACATTCCTACATACAAGGGGAAGATTAAGCGTATAGCATTCCAGTTCACTCCGTACAGTTGGGTGAAGTTTGAGTGGAAGCCTGCTTCAAACCTTCGTCGCTGGCTTGCGGTGTTGGGCATCATCTTTATGTTCCTCCTGGCGGAGCTGAACACCTTCTACCTGAAGTTTGTGTTGTGGATGCCTCCTGAACACTACCTGGTGCTGCTCCGCCTGGTCTTCTTCGTCAATGTAGGAGGGGTAGCCATGAGGGAAATCTACGACTTCATGGATGACCCGAAGTTTTACAAGAAGCTTGGCCAGCAGGCGTGGCTGGTGGCAGCAATCACAGTGACCGAGTTCCTCATAGTGGTCAAGTATGACCCCAACACCATCATGCTGCCCATCCCCTTCTTCATCATGCAGTGCTGGCTCTTAGGAATCCTCCTCATCTTTACCTGGACACTATGGCGGTTTTTCATCCGTAATGTCCATGTCCAGTGAGTGACATCACGCTCCGTTATAAAGAGACCCGACGACGCAAACAGGAAGTCCCCACGGACCGGGAGCGCCCACTGGGCAACGTGGGCACAGCCACCCCGTCCGGGCGGAGCAAACTCAACGGCAGCTCCGAGA

Function

GO:

id name namespace
GO:0006659 phosphatidylserine biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118029 lncRNA downstream 68875 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 281307 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 460628 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 474519 23198588 ~ 23224641 (-) True LOC120563856
XR_005640017.1 lncRNA downstream 482022 23198572 ~ 23217138 (-) False LOC120563856
TU118160 lncRNA upstream 305587 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 310161 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 626696 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 852061 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 861064 24593361 ~ 24593577 (-) True G87755
XM_039809246.1 mRNA downstream 35357 23653545 ~ 23663803 (-) True LOC120564359
XM_039808217.1 mRNA downstream 48783 23647381 ~ 23650377 (-) True LOC120563807
XM_039807479.1 mRNA downstream 114593 23577578 ~ 23584567 (-) False LOC120563353
XM_039809456.1 mRNA upstream 147994 23880291 ~ 23893596 (-) True LOC120564460
XM_039807594.1 mRNA upstream 167996 23900293 ~ 23904797 (-) True LOC120563437
XM_039808436.1 mRNA upstream 176872 23909169 ~ 23911818 (-) True LOC120563922
XM_039808433.1 mRNA upstream 195131 23927428 ~ 23937460 (-) False polg
XM_039808434.1 mRNA upstream 195131 23927428 ~ 23937399 (-) True polg
TU117944 other downstream 200501 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 992964 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 992964 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1959832 21735006 ~ 21739328 (-) True LOC120564778
TU118073 other upstream 6685 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 172805 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 176872 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 176872 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 183537 23915834 ~ 23915906 (-) True trnar-acg_18

Expression Profile