RNA id: XM_039810054.1


Basic Information

Item Value
RNA id XM_039810054.1
length 2331
RNA type mRNA
GC content 0.44
exon number 7
gene id si:dkey-10o6.2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10141783 ~ 10149106 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGTCTGCTTActgtttgttgttattattacatCCTGTGGGTTAGACATACTTTGCATACCtgttcagaaacacattttggtTCTTTTAAAAATGAGCATTCCAGTGGTGGACTTTGGCGCATACAGCCTGAGTAAGGAAGATGTTACCGACGACCAGATGCGAAATTTAAGCAAAGAGTTGAAAACCGCTTTTATAGAagttggttttgtttttctgaagaACACTGGGATCACTCAGGAGGAGGTGGATGGTGTTATGGCCATATCCAAGACATTCTTCCTGCAGCCAGATGAAGTGAAACAACCCTTCAGCAGGAAAAGCTTTGCCAACAATCCCAACCACGGCTGGGTGTCTCTGGAGACTGAGAAgttgaATCCACGTCGGCCTGGAGACCTAAAGGAGGCATTCAACTATGCTTCACTCCACCCTGACATTaaatggcCATCTGTAAAAGGGTTCCAGGAGATCCAGACGTCTTTCTTCCAGCGCTGTACAGAGCTAAGTCTGCGGGTGCTGAGGGTGATGGCCCACAGTCTGGGTCTGAACCCAGAGGTGTTCCTGAGTGCGCACCGTTTAATAGGAACTGATGAGAATGGCACAACACTGCGGTCTCTGTACTACCCCCCAGTAAACCATGAGAAAGTGAAGGAGGGTCAGCTGCGATGTGGAGAACATTCCGACTACGGCAGCATCACCCTGTTGTTTAGCAGCTCTGAGGGTCTGCAGGTTCGAAAACGTTCAGGTGAATTCATCTGCGCTCCCTCCGTCCCCGGAGCGGCCCTCATCAATGTCGCTGATCTGATGCAGCGCTGGACCAATGATCAGTTTGTCTCTGTGCGCCACAGAGTtgtgctgccccctgctgggGACTCCCGCACACGTCAGTCTCTGGCTTTCTTCGTCCAGCCGGATGATGAGGCTCTGATCACCTGCTGCGACGGCTCCAACAAATACCCCCCAGTTACAGGAGGCGACTACCTCATGGAGCGATTCAATGCCTCATATGGAAACTGAATCTCTACCCCGCCCTATTCTGTACAGGCAGCCAGCGTAGGGAGGCAAGAATGGGAGTAATGTGCTCCCTCTTTTTGACCTTGTCAAAACTCTTGCTGCTACATTTTGAACTAGTTGGAGACAAGATGATACCAAACTATAACTGGTTGCAATAATCAAGGCAGGGAGATATAAAGGTATTATTATTTGACTGTTTTTAATTGTAAAGTGTTTTAGTTTTGGTTTTAGGACCATACTTCATGGTCCTAAAATTGCACCTAAAATGTATTGATCTATACCTGgaatttattcatgttttatcaAGTTAGTTTTGTCTAAAATAATCAATATGTCACTTTAGATCCCACactgtttttacatttgaaatatGATGGTGTCAGTGATATAAACTtatataaactttatttcagTCCCAGGGCGATCCATATCACAATAAAAAGCACACAGAGtataacataaaatacaaaaatgcaaAACCTTCCACAATGTTTAGTGTCTGACATACAGACGTTCGCCAATGGTTCCACAGTCTGGAAGAAAAAACAGGTTAGCCAAAACAGTGATCAAGTCATTTTCTGACTCAGATCCCCTACAAATAAATCTATACATCAGGATACGTAAAACAGCAGAGCAGATAGGTACCCCGACACTGACAAACATGCTGTCATTATAAGCCACTATGAGTTTTCTAATGCTGCCTTGCTTATAACGACACCACAGGTAGGCAGTAGATCTTCACAGATACACAGCACATGCTAAACTTACGACGCAGCACGTTAGCTTGAGCATACAGCTTCCGACGCTGCCTTATCATCAGACAGGTCATTTGCAATAATATGGCCCAAATATGTAATCTCACTGCACACCCTAAGTGCAGTGCCAGACAGATATAAGTCAGGGAAGGTtgactgtctgtcttctctACTTCTAATAATCATGATCTTACTCTTTTtggcattgtattttatatcaaAATCAGCACCATACTGGGTGCATATTCTCAGAAGCTGTTGGAGACCAGCACTATATGGGCTAAAAATGACCAAATCATCTGCGTACATAAGGTGATTAATTAGTGAGTCACCAACCCTACAACCTGTACcacatacatttaaaatcaaGGAACAATCATTCATAtacatattaaaaagaaaaggagacagaATTCCACCCTGGCAGACACCATTGGCCACTTGGAAGGGGACAGATGTAACATTCCCCCATCTAACTATCATTGTCTGATGCGAGTACCAATACACCAAGATTCTGTGAGTTAATGtgtatgatttaaaaaagaaacaaacctCAAACCTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112642 lncRNA downstream 7038 10132747 ~ 10134745 (-) True G83669
TU112618 lncRNA downstream 72009 10067929 ~ 10069774 (-) False ppp1r15b
TU112613 lncRNA downstream 236868 9894777 ~ 9904915 (-) True LOC120563773
TU112573 lncRNA downstream 249028 9891384 ~ 9892755 (-) True G83613
TU112570 lncRNA downstream 253111 9888444 ~ 9888672 (-) True G83610
TU112679 lncRNA upstream 35130 10184236 ~ 10184640 (-) True G83699
TU112684 lncRNA upstream 40713 10189819 ~ 10191806 (-) True G83703
TU112737 lncRNA upstream 53625 10202731 ~ 10204403 (-) True G83744
TU112740 lncRNA upstream 66297 10215403 ~ 10277798 (-) False G83746
TU112741 lncRNA upstream 66297 10215403 ~ 10277798 (-) True G83746
XM_039808148.1 mRNA downstream 11826 10078071 ~ 10129957 (-) True pik3c2a
XM_039808900.1 mRNA downstream 64819 10072964 ~ 10076964 (-) True rps13
XM_039808901.1 mRNA downstream 69273 10067916 ~ 10072510 (-) True ppp1r15b
XM_039808178.1 mRNA downstream 114806 9894966 ~ 10026977 (-) False LOC120563773
XM_039809226.1 mRNA upstream 17218 10166324 ~ 10173342 (-) False tdg.1
XM_039809225.1 mRNA upstream 17218 10166324 ~ 10173342 (-) True tdg.1
XM_039809350.1 mRNA upstream 25365 10174471 ~ 10180001 (-) False tdg.2
XM_039809349.1 mRNA upstream 25365 10174471 ~ 10180001 (-) False tdg.2
XM_039809347.1 mRNA upstream 25365 10174471 ~ 10179999 (-) True tdg.2
TU112643 other downstream 53183 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 68361 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 631712 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1566352 8575254 ~ 8575431 (-) True LOC120564825
TU111877 other downstream 2850356 7287895 ~ 7291427 (-) True G83064
XR_005640102.1 other upstream 25718 10174824 ~ 10179997 (-) False tdg.2
TU112851 other upstream 278456 10427562 ~ 10432144 (-) True G83826
XR_005640086.1 other upstream 494926 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1738921 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1992417 12141523 ~ 12144546 (-) True G84123

Expression Profile