RNA id: XM_039810074.1



Basic Information


Item Value
RNA id XM_039810074.1
length 1024
RNA type mRNA
GC content 0.62
exon number 3
gene id LOC120564807
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 6968924 ~ 7030622 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctGTCTTGTGTGGATGCTGCAGATCGCCGCGGATCTTCAGACCCGGAGGCAGCAACTCCAtctcatcctcttcctcctcctcactctTCAACACCGGGCAGCCGGGCACCGACAAGCCGGTCCGCAGGGCGACATACCCGGCGGGGAAACGTGCAACATGCCCGCTGAGCAGCTCCAGCCGGGCCCGGTGTCGTTTTTTCCACTTCTGGGGGGATTTACGTGGTCAAGCGGACGGAGACTCCCCATGGATCCGAAGCGCAGAGAGCTGTAAGTTGGAGGCGGGAAAACTGGAAAACTTCTTCTCCCGAGCagatttttgtattttgatGAACATGCTGTGGCGGAGGGAATCACCCCGggcatctgctgctgctgctgctgccgccggcCGCAGCTGCGGACCGTGACCCGCAGGGGAGCGCGGCGAGGACCCCGGCAGCTTCACCCGGAGAGTCCCGGGAAGGGAAAACCAAACGTCTTAGCTGCTGCCTTTAAAATCTTCTCCACTGTGGATTTGTCACTTCAGGCTCGTGCGTGATTTCATATCCCGGAGATGCCAGCCGTGTCTGGTCTCCGTCCTCCTGTGGATCGGATCGGGATGGATGTGGCGCAGTAAGGAGGCACCAGCCTGCGGATAATCACAGTTTGGACTTTTTTGGTTCCCCCGTGTGCGGCTCGCGGCTCTCCCTCATGCAGCTCCTCCGGCTGGCCTGGGCTCTGACTGCCGCTGCGGTCTGCTTCCTGCTCCTCCTGATCCTCCACAACCACATCCTGAGAGAAgGTCAGCTGGCGGCGGGGACCTGTGAGGTCGTCACTCTGGACCGGGACAGCAGCCAGCCGAGGAGGACCATCGCCCGACAGACGGCCCGCTGCGCCTGCAGGAAGGGACAGATCGCCGGGACGACCCGAGCCAGACCGGCCTGCGTCGACGCAGGACGAGACTGCAGTCAGCTCTCATCCGTCCTCTCACATCTCAAATCCCCGGCTCGAATACCTCGGCTGACTTAAACCTGCTAGTCTGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111729 lncRNA downstream 151945 6841643 ~ 6843086 (-) True G82941
TU111714 lncRNA downstream 188499 6797975 ~ 6806532 (-) True G82930
TU111635 lncRNA downstream 513554 6481060 ~ 6481477 (-) True G82884
XR_005640129.1 lncRNA downstream 525118 6469035 ~ 6469913 (-) True LOC120564630
TU111607 lncRNA downstream 672865 6321869 ~ 6322166 (-) True G82859
TU111768 lncRNA upstream 13855 7044477 ~ 7044863 (-) True G82972
TU111769 lncRNA upstream 13855 7044477 ~ 7044863 (-) False G82972
TU111772 lncRNA upstream 45156 7075778 ~ 7076006 (-) True G82975
TU111781 lncRNA upstream 86031 7116653 ~ 7117208 (-) True G82983
TU111813 lncRNA upstream 143400 7174022 ~ 7182239 (-) True LOC120563994
XM_039809793.1 mRNA downstream 166710 6826664 ~ 6828321 (-) True LOC120564637
XM_039809789.1 mRNA downstream 178688 6800168 ~ 6816343 (-) False LOC120564636
XM_039809787.1 mRNA downstream 178688 6800168 ~ 6816343 (-) False LOC120564636
XM_039809788.1 mRNA downstream 178688 6800168 ~ 6816343 (-) False LOC120564636
XM_039809791.1 mRNA downstream 183990 6799443 ~ 6811041 (-) True LOC120564636
XM_039807525.1 mRNA upstream 65899 7096521 ~ 7101595 (-) True LOC120563388
XM_039808557.1 mRNA upstream 145137 7175759 ~ 7197808 (-) False LOC120563994
XM_039808558.1 mRNA upstream 145137 7175759 ~ 7197806 (-) False LOC120563994
XM_039807420.1 mRNA upstream 206099 7236721 ~ 7254912 (-) True deaf1
XM_039807421.1 mRNA upstream 206099 7236721 ~ 7254479 (-) False deaf1
TU111339 other downstream 1511540 5480748 ~ 5483491 (-) False faap24
TU111250 other downstream 1983156 5004392 ~ 5011875 (-) True urahb
TU110810 other downstream 2716672 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 3416647 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 3614503 3380027 ~ 3380528 (-) True G82122
TU111877 other upstream 257273 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 1544632 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 2479320 9509942 ~ 9510071 (-) True LOC120564823
XR_005640161.1 other upstream 3042671 10073293 ~ 10073422 (-) True LOC120564824
TU112643 other upstream 3055742 10086364 ~ 10088600 (-) False pik3c2a

Expression Profile