RNA id: XR_005639947.1


Basic Information

Item Value
RNA id XR_005639947.1
length 2239
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120563411
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21140507 ~ 21146513 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGAAGTTAAAATAAGCTTTTGACAGTTCAGCAGAGTCGATATAGCTCATGTCTATATGATGGTTGTCAGTGTCACacaaacagagaagaagaagaaggtgcATTAGAGTGAAGAAAGAACAGATATTTTCAGTCTCTTTGGGTTTTTATAGCAGAGCTGACCTTGGGTGAAGGATTGGGCGAGGATGGTCAGGATGTTGGGTAGCGGGTGGAGGCTGGCTGCGGCACTGTGGACATGTAGAGAGGCATTCCTTGCGATGCTGCGGCTGTGGATTCACACACAGCTGGAAGGATGCATCAAAGTGAAAGAGAGGAGGGTGGGAggtcagaggaggagagacaagTAGCAGGTACACAGCACTGTAGAATGAAGATGAAGAAGCTGGATGACTGACCAAAAGATCAAAAAGAAGGGGGGTTTGGGGGTGTGACTCAGCCCTCATAGCCACTTCCTTTGGCATCTTCAGGATGGACAGATGAAAGTAGGAGAGGGAGTAACTCATCGTGTGGTCAGCTTGCTCACCATATAGGAACGGATACTGGGAAAGGAAGCATGTGCGTCTGGGTGATGGGGGGCTGGGataatatgtatgtgtatgagtGTTTGGTGTTTGACAGAGGCACAATTATTCCATTTCCCGTAACACCAGAGGAATGCAGGGTGAGATTCCTGCTCTGTGAGTCGTGCCCTCTCACCTGCCATCACCATACGGATACTATTTCATCCTTCCCTTTCCCCCCTCGAACGGGGAATTCCccagtgtgtttgtttttactcATGTAGGAAGTTACAGAGTTTTTATAAGCTGTGTTGTTCTGGTAATAATTGGATACAAGTTGCAGCTTAgtttaacaaaaatatgttcCTGTTTTCTCTGTACACAATTTATTGCGCTCATTTAAATGAGATCAGGAGTCTAATCTAGTCATCATAAATGAGGGGAAACAAGGAAAAATGCTACTCATTTTACAGCATTTTAGAGCTGGTTACTTACAAGCATGGAGGAAATAAATCTGGAGCATTATGTGGATGCAGCGTGTCGATGGAGTAAATTGCTTGTTTGCGTTGAGAGAGAGGATGCTTTGTCATGCTGGGtgtgtaatgtttgtgtgtgtctttgcgaGAGTAAGCTTAAGAAGCTACTGCACCTTTTATTTCCTGTATGGTTAATTATCCTATCATGTTTCTAAGGCTTACAAAACAATAAGATATTCACTGTTTACATCATTATACCTTACTGAAAATATTAATACAGGGCAGTTtatctacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagccTATGGTGACTCACAGTTACAATAATGACTCTGGCAGAGCAGTTGGATGAACAGCTCACGCTGACtgtaaaagagagaaagagcgagAGGAGAGGGGGCTGTGCTCTCCCTGGCATCTCCATCTCATAACTCTTCTGCCGCTCAGTgtgttcatacacacacatagaaacacacatatTCATACAGCCTGAAGACAACCCTGAGGACTACAGCACCATGTTCAGTATAATACACTTTAGACCGAGCAGCGAGTGTGAAAACGCCTCCAGGGAGGAAATAATGCTTTGTGTGGTAGGTGACGGATCTTTTGCAACAGAATCAATGGGCCATCGTGCAGCAAGAGGCAGCCTCCCTCTACAAACAACAACCGCTACATTTGATCTACACTGCATCCAACTAGCAGCACGAGGCTTGCCAGTCCATACAGTATAACACAATATCAAAGGATGTCTTTTTCTGTATCCAACTTATCGTGTATTGAATGTTTAAGCACAATGCACTGTCTATAAAATCAGAAGACTGCACTCAGAAACTGATTTCATTTGGTGACGTAGATGTTTGTACCCAGTCTCTAGCACCATATGAAAACAGTGTTCTGGGTGGTGGTATATCAGCACGTAAGTACAACTTCTCTCCACACGTGTGTTTTATGGAACAATCAAAATGTACACAGAAATAATACCCTATTTCTTAAGGACTGGTATGACCAACATGTTGTGTTCATTTGTGAACTTCTAAATGAGAGGGGGGGACCTAGCTACCTATGAAGAGTTTATCCATCACAGAGAATTGGACATTTCTCGAACTCAACATTCCAGAGTACTTAAAAGTATATCCACTAATTTGCTGACTCTCATTAAAGAGTAACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117182 lncRNA downstream 37128 21102630 ~ 21103379 (-) True G86976
TU117040 lncRNA downstream 231917 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 440870 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 678684 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 876301 20250890 ~ 20264206 (-) False G86660
TU117244 lncRNA upstream 98497 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 223050 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 316192 21462705 ~ 21466246 (-) True G87107
TU117371 lncRNA upstream 340019 21486532 ~ 21512528 (-) True G87120
TU117376 lncRNA upstream 400145 21546658 ~ 21549859 (-) True G87123
XM_039809870.1 mRNA downstream 6288 21120429 ~ 21134219 (-) True LOC120564685
XM_039807859.1 mRNA downstream 42121 21087412 ~ 21098386 (-) False tasor2
XM_039807857.1 mRNA downstream 42132 21073066 ~ 21098375 (-) False tasor2
XM_039807858.1 mRNA downstream 42132 21073066 ~ 21098375 (-) False tasor2
XM_039807856.1 mRNA downstream 42132 21073066 ~ 21098375 (-) True tasor2
XM_039809388.1 mRNA upstream 4987 21151500 ~ 21158504 (-) False LOC120564432
XM_039809387.1 mRNA upstream 4987 21151500 ~ 21158504 (-) False LOC120564432
XM_039809389.1 mRNA upstream 4987 21151500 ~ 21158503 (-) False LOC120564432
XM_039809386.1 mRNA upstream 4987 21151500 ~ 21158503 (-) True LOC120564432
XM_039809891.1 mRNA upstream 13838 21160351 ~ 21165666 (-) True slc35b4
TU117029 other downstream 260869 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 311904 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 881248 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1457590 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1568585 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 566529 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 588493 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 588493 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1542648 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1544535 22691048 ~ 22706196 (-) False parvg

Expression Profile