RNA id: XR_005639984.1


Basic Information

Item Value
RNA id XR_005639984.1
length 589
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC120563610
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15455840 ~ 15456554 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTGATGCTGCTGATGATCTCGAGGAAGGACGGACGCATCTTGGGATTATACTGCCAGCACATCCTCATCAGCTCAAACCTGCAAGTGACGCGAGGTAAAAAGGATACATTTGGAAGACACCAAGGtaatttgactttgacttgctGAAGCCTCATAAGTTTTGACAAAAAGAGAACTATGGATTTTGTGTAATTGTGCCACTTCAGAGCCAGGAGAACATGAGGAATGATTACAGCAGCGGACAACTCTTTCAATGTACACACGGGCATGTGAGTATTGTGTACTTGAAAAGAtgtgaacctatcctttaaAACTTTAGAGTGGGAAGACTTTGCGTTTCTCACCAGCAGGTGGCAGGAGACACCAAAGTTAAAGCCAATGTTAATACTCGCTGGCACGAAGTTTCACTATACTgatcttggaaaaaaaaaaactatgtatacagtacattaataTAGTACTGTAAACTATCCCAATATACTGTACTAAGATGCTCTGATtactgtttttctgttgtcttTTTGGAAATTCATTCTGTGCCTTTCATAACATTAAAATGGACACAAAATAAAAGTGTTACATTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639985.1 lncRNA downstream 326 15453209 ~ 15455514 (-) True LOC120563611
TU114585 lncRNA downstream 92415 15361837 ~ 15363425 (-) True G85084
TU114507 lncRNA downstream 276667 15178340 ~ 15179173 (-) True G85027
TU114476 lncRNA downstream 392703 15062611 ~ 15063137 (-) True G85011
TU114472 lncRNA downstream 397911 15057725 ~ 15057929 (-) True G85007
TU114634 lncRNA upstream 10028 15466582 ~ 15472857 (-) True G85125
TU114653 lncRNA upstream 79617 15536171 ~ 15544082 (-) False G85133
XR_005639953.1 lncRNA upstream 402287 15858841 ~ 16048241 (-) True LOC120563424
XR_005639952.1 lncRNA upstream 512519 15969073 ~ 16048241 (-) False LOC120563424
TU114806 lncRNA upstream 717135 16173689 ~ 16183427 (-) False chd2
XM_039808617.1 mRNA downstream 137995 15310877 ~ 15317845 (-) False cd9a
XM_039808618.1 mRNA downstream 139454 15310877 ~ 15316386 (-) True cd9a
XM_039808619.1 mRNA downstream 151560 15298687 ~ 15304280 (-) True syt1b
XM_039808613.1 mRNA downstream 163878 15262486 ~ 15291962 (-) False otogl
XM_039808612.1 mRNA downstream 163878 15262486 ~ 15291962 (-) True otogl
XM_039807895.1 mRNA upstream 253 15456807 ~ 15463714 (-) False pgpep1l
XM_039807894.1 mRNA upstream 4246 15460800 ~ 15463714 (-) True pgpep1l
XM_039808556.1 mRNA upstream 16380 15472934 ~ 15484145 (-) False ttc23
XM_039808198.1 mRNA upstream 345870 15802424 ~ 15811999 (-) False nr2f2
XM_039808196.1 mRNA upstream 345870 15802424 ~ 15809656 (-) True nr2f2
TU114482 other downstream 382490 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 488393 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 948639 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 1218888 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1422625 14031104 ~ 14033215 (-) False zgc:77752
TU114636 other upstream 22428 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 58224 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 982820 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1308161 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 1351502 16808056 ~ 16808416 (-) True G85435

Expression Profile