RNA id: XR_005639987.1


Basic Information

Item Value
RNA id XR_005639987.1
length 589
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC120563633
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22577017 ~ 22682276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATTACTGTAGCTGTAAACACCTTTATTGCAAATAGGCTATAGCGTATAAGCAAGCTAGCATACCAACAGCCTTATTATGTCACTTTAGGACGTCTTTGTGGACTACTAAAAACGTTTTTGGCTTCCCAAATGCTGAAGGCCATCATTTGAAATACTTGTTGGCCGGTCACCTCTCCTTAGGGACCTCCTCTCATAATCCTCCTCTCAACCAACGCCAATTTCAACCGGAAGTTCTCGTTAACTGCCATCTTATCGCCAATTCTTCCCACTTTGACATGCCAATATCACTTCACTAAGGTTGCTGctgggttgttgttttttgaggTGCTTTTTATTCAGTCCTTcacagcagagaggagagaatgACAGATGACAAAAGCTCCAGGCCAGGACAAAACCAAGGACACGGTTGTACGTAGGTGGAATGAGAACCTGTCTGACAGGAGATTTGTCATGGATGTTGACCATGTACTGATGCTTCATCACTCCCAGTTCTCTGTGTGGGTGTTTTGTGCCCTACCAGACCTGCACAAAGACCCAGATGAGCCTGCTCTTTGGAAAATAATAACCACTCTCACAGGAACAGG

Function

GO:

id name namespace
GO:0009186 deoxyribonucleoside diphosphate metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117635 lncRNA downstream 186801 22387995 ~ 22390216 (-) True G87329
TU117629 lncRNA downstream 210039 22350392 ~ 22366978 (-) False LOC120564428
TU117622 lncRNA downstream 221821 22287944 ~ 22355196 (-) True G87320
TU117542 lncRNA downstream 470762 22105880 ~ 22106255 (-) True G87254
TU117537 lncRNA downstream 494479 22070958 ~ 22082538 (-) True G87249
TU117745 lncRNA upstream 78909 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA upstream 78909 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA upstream 152329 22834605 ~ 22837835 (-) True G87400
TU117838 lncRNA upstream 466843 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 516296 23198572 ~ 23217138 (-) False LOC120563856
XM_039807941.1 mRNA downstream 22125 22431837 ~ 22554892 (-) True plxnb2b
XM_039807940.1 mRNA downstream 50821 22431837 ~ 22526196 (-) False plxnb2b
XM_039807942.1 mRNA downstream 51126 22431837 ~ 22525891 (-) False plxnb2b
XM_039807938.1 mRNA downstream 148079 22400749 ~ 22428938 (-) True tubgcp6
XM_039809372.1 mRNA downstream 210154 22347170 ~ 22366863 (-) True LOC120564428
XM_039807955.1 mRNA upstream 8772 22691048 ~ 22706196 (-) False parvg
XM_039807953.1 mRNA upstream 8772 22691048 ~ 22706196 (-) False parvg
XM_039807954.1 mRNA upstream 8772 22691048 ~ 22706196 (-) False parvg
XM_039807952.1 mRNA upstream 8772 22691048 ~ 22706196 (-) False parvg
XM_039807948.1 mRNA upstream 11435 22693711 ~ 22706296 (-) False parvg
TU117418 other downstream 837689 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 837689 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 863463 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1697379 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1748414 20806882 ~ 20828603 (-) False LOC120564033
XR_005639990.1 other upstream 6885 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 8772 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 812054 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1056706 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1222826 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile