RNA id: XR_005640151.1



Basic Information


Item Value
RNA id XR_005640151.1
length 128
RNA type snoRNA
GC content 0.55
exon number 1
gene id LOC120564813
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 982236 ~ 982363 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCCTGTATCGAAAGTGACCGTGGCGTCCTCGTCGCCATGGTCATCGATAGTACAGGAAGAGCAACCTGCGAGCCTTTCCCGTGTTTGAAGGATCATCTGTTCCTATCAGACCCTGGCGCTCCCAGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109659 lncRNA downstream 22641 938390 ~ 959595 (-) False G81435
TU109658 lncRNA downstream 22641 959193 ~ 959595 (-) True G81435
XR_005639986.1 lncRNA downstream 69463 902195 ~ 912773 (-) True LOC120563618
TU109192 lncRNA downstream 128139 844900 ~ 854097 (-) True G81153
TU109188 lncRNA downstream 142947 832377 ~ 839289 (-) False G81150
TU109686 lncRNA upstream 24645 1007008 ~ 1007445 (-) True G81447
TU109687 lncRNA upstream 26519 1008882 ~ 1009249 (-) True G81448
TU109691 lncRNA upstream 33317 1015680 ~ 1109416 (-) True G81450
TU109683 lncRNA upstream 40219 1022582 ~ 1032944 (-) True G81446
TU109698 lncRNA upstream 80755 1063118 ~ 1064072 (-) False G81456
XM_039807903.1 mRNA downstream 46892 866706 ~ 935344 (-) True glsl
XM_039808070.1 mRNA downstream 182512 754068 ~ 799724 (-) True LOC120563709
XM_039808069.1 mRNA downstream 235183 720006 ~ 747053 (-) False LOC120563708
XM_039808066.1 mRNA downstream 462863 488832 ~ 519373 (-) True tbc1d15
XM_039808065.1 mRNA downstream 509512 448054 ~ 472724 (-) True LOC120563705
XM_039807474.1 mRNA upstream 86426 1068789 ~ 1088673 (-) True LOC120563352
XM_039807797.1 mRNA upstream 169889 1152252 ~ 1177870 (-) True si:ch211-59o9.10
XM_039807811.1 mRNA upstream 199143 1181506 ~ 1194264 (-) True LOC120563572
XM_039808073.1 mRNA upstream 213560 1195923 ~ 1203372 (-) True sycp3
XM_039807821.1 mRNA upstream 222431 1204794 ~ 1235228 (-) True actr6
XR_005640150.1 other downstream 5228 976881 ~ 977008 (-) True LOC120564812
XR_005640148.1 other downstream 7703 974406 ~ 974533 (-) True LOC120564811
XR_005640147.1 other downstream 11625 970484 ~ 970611 (-) True LOC120564810
TU109164 other downstream 182698 798697 ~ 799538 (-) False LOC120563709
TU109131 other downstream 243213 719054 ~ 739023 (-) False LOC120563708
TU109678 other upstream 21676 1004039 ~ 1045512 (-) False G81445
TU109680 other upstream 35967 1018330 ~ 1045512 (-) False G81445
TU109681 other upstream 35967 1018330 ~ 1045512 (-) False G81445
TU109674 other upstream 62029 1044392 ~ 1045512 (-) True G81445
TU109718 other upstream 247477 1229840 ~ 1235216 (-) False actr6

Expression Profile