RNA id: XR_005640316.1


Basic Information

Item Value
RNA id XR_005640316.1
length 1603
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC120566002
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 453142 ~ 465715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCCGCTCCATACCATATGGAAtcatgggtaaaaaaaaaaaaaaaaaaagctccttGACAATGAACCAATCTCATGCAGACCCCGTGGCAAGGTGAGCGGCAGTCATCTGCTCAGAGAGGGAAAACacacaccccctctctctcacacacacacatataccctcacacacacacacatataccctcacacactctcacacacacacacacacatatataccctcacacactctcacacacacacacatataccctcacacactctcacacacacaggacacacagccGAGCAGAATGATGAGCCTTTTTCCACATCACCGTACGCCTCGGGTCGCTTCTcccttctcctttttttctctctccccccttcctCGGGTATAATTAGGGCTTTATCGTCATCCTCACCCGAGAgcaagaacaagaagaagaagaggaagaggaagaagaagaggaagaaaaagaaaaagagaagagaagaagcagTCCAGGGGCAGAACTGAACTGACTCCACAACTTGTAATGCGTCTTTATGGTGACTTTAACGGGACGGaggcaggtagagagagagagagagagagagagggagagagagagagagagagagagctctggACACATGGAACTGCTTACACACTATCATGTTAGCTTTTGTTTTGGgtttccatcttttcctcttcccccccccccgctccaTCCCTCTTTCTTCTCCCCTGAATGAATCCCTCCGTCCCTCCTTCTTCTTCAAGCAGGACAGAAAACTCGTGTGTTTTGCCATAAATACCTCCACGCCGAAGGATCCCGTGGAAGCCCGGAGAGACGGTCCATCGCGCCTGCAAAAGACACAACACGACAACACAGAATCAAGCCTGTGAATGCATCGCTGTTTTTGCAGCCGACCACTGGATAATGACAGATAAAAGCAGCGGAGAACGTCCGACgcggagcagcagcagcagcagcgtccCATCCTGTCGCACATCAACAAACTTGCTGTAACCTGGCTGGAGTACTCGAGTCCGGACTTGGACCTGGACTTGGACCTGGACTTGGACCTGGACTTGCCACTGGCGTTGCCAAATAcagcttttggtctcgaccgagtccaggTGTCTTCACTATGTTTATAATCACATTGGAGGGAAAGTGCAACACTGGCCACCTGATAACCAATCACACACTAGACACTGTTTTTGCTTTTGCAAATAATAACCCCAAAATGATTGTCTTGATACTGTCATGCATaagatttttaattttttcatctGTCCTGGACTCGGTCTTGTCTTGAATTTGAACCTCTTTGGACTCGGCCTTGACCTGGTCTCGACTAGgtggtcttggacttgtcttggactcaacAAAGGTGGTCTTGGCTACAGCCCTGACtcctacatatatatacagtatacaaacTGCTGTCCCAGATGCTGGTGGTGCATTCAGCTCCCAGTAGGAGGCAGTGTTGTGTTTctgggttttatttattttgtcttgaaGAGGAATGTGGACTGAAATCAGGACAGCTGTTTCTGATTTGACTCACCTGCTCCCTGACTGTAGCCGACTCTTCCTGCTGTCATGTTCCAGTGAATCTGGGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123646 lncRNA upstream 643 407787 ~ 452499 (+) True G91877
TU123645 lncRNA upstream 643 433607 ~ 452499 (+) False G91877
TU123644 lncRNA upstream 643 451424 ~ 452499 (+) False G91877
TU123625 lncRNA upstream 5973 364410 ~ 447169 (+) False G91866
TU123628 lncRNA upstream 5973 364410 ~ 447169 (+) True G91866
TU123675 lncRNA downstream 34373 500088 ~ 500565 (+) True G91892
TU123676 lncRNA downstream 40771 506486 ~ 507276 (+) True G91893
TU123679 lncRNA downstream 43381 509096 ~ 510112 (+) False G91895
TU123668 lncRNA downstream 43426 509141 ~ 532393 (+) False G91887
TU123678 lncRNA downstream 43563 509278 ~ 510112 (+) False G91895
XM_039811808.1 mRNA upstream 293685 141925 ~ 159457 (+) True LOC120565788
XM_039811713.1 mRNA downstream 318484 784199 ~ 808239 (+) True stx6
XM_039811714.1 mRNA downstream 320987 786702 ~ 787874 (+) True LOC120565732
XM_039811715.1 mRNA downstream 320987 786702 ~ 787874 (+) False LOC120565732
XM_039811716.1 mRNA downstream 320987 786702 ~ 787874 (+) False LOC120565732
XM_039811564.1 mRNA downstream 366526 832241 ~ 854498 (+) True wdr18
TU123592 other upstream 135174 273138 ~ 317968 (+) False G91842
TU123552 other upstream 297434 154852 ~ 155708 (+) True G91827
TU123666 other downstream 43426 509141 ~ 566466 (+) False G91887
TU123686 other downstream 75976 541691 ~ 542909 (+) True G91897
TU123696 other downstream 115092 580807 ~ 593877 (+) True G91903
TU123859 other downstream 256658 722373 ~ 758976 (+) True G92019
TU123860 other downstream 289880 755595 ~ 758976 (+) False G92019

Expression Profile