RNA id: TU123924


Basic Information

Item Value
RNA id TU123924
length 230
lncRNA type read_through
GC content 0.50
exon number 3
gene id G92066
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 900221 ~ 984045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcccttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123920 lncRNA upstream 62594 860473 ~ 860703 (+) True G92062
TU123876 lncRNA upstream 97251 824574 ~ 826046 (+) True G92029
TU123874 lncRNA upstream 104972 816582 ~ 818325 (+) True G92027
TU123856 lncRNA upstream 149340 769473 ~ 773957 (+) True G92018
TU123869 lncRNA upstream 154623 765454 ~ 768674 (+) True G92022
TU123979 lncRNA downstream 24677 1008722 ~ 1112847 (+) True G92102
TU123991 lncRNA downstream 61618 1045663 ~ 1046099 (+) True G92109
TU123999 lncRNA downstream 63491 1047536 ~ 1062632 (+) False G92111
TU123998 lncRNA downstream 66158 1050203 ~ 1062632 (+) True G92111
TU123945 lncRNA downstream 119147 1103192 ~ 1301580 (+) False G92071
XM_039811564.1 mRNA upstream 68799 832241 ~ 854498 (+) True wdr18
XM_039811713.1 mRNA upstream 115058 784199 ~ 808239 (+) True stx6
XM_039811799.1 mRNA downstream 26702 1010747 ~ 1025143 (+) True plppr3b
XM_039811451.1 mRNA downstream 238288 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 338360 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 553954 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 641529 1625574 ~ 1630680 (+) True LOC120565565
TU123859 other upstream 164321 722373 ~ 758976 (+) True G92019
TU123860 other upstream 164321 755595 ~ 758976 (+) False G92019
TU123696 other upstream 329420 580807 ~ 593877 (+) True G91903
TU123666 other upstream 356831 509141 ~ 566466 (+) False G91887
TU124034 other downstream 184776 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 218842 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 236765 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 237328 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 257342 1241387 ~ 1256194 (+) True G92169

Expression Profile