RNA id: TU123953


Basic Information

Item Value
RNA id TU123953
length 513
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G92078
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1106149 ~ 1129822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacaaacacacacacacagagacacaaacacacacacagacacacacacacacacacacacacagagacacacacacagacacacacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacagagacacacacacacacagacacacacacagagacacacacacacacacacacacacagacacacacacagagacacacacacagacacacacacagacacacacacagagacacacacacagacacacacacatgcacaaacagacacacacacacacaaacacacacacacacacacacagagacacacacacacaaacacacacacatacacagagacacacacacacaaacacacacacacatacacagagacacacacacacacacacacacacacacacacatacacagagacacacacacacacacagacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123970 lncRNA upstream 42389 968991 ~ 1063760 (+) False G92094
TU123999 lncRNA upstream 43517 1047536 ~ 1062632 (+) False G92111
TU123998 lncRNA upstream 43517 1050203 ~ 1062632 (+) True G92111
TU123991 lncRNA upstream 60050 1045663 ~ 1046099 (+) True G92109
TU123924 lncRNA upstream 122104 923297 ~ 984045 (+) False G92066
TU124032 lncRNA downstream 23452 1153274 ~ 1154717 (+) True G92144
TU123962 lncRNA downstream 52724 1182546 ~ 1211478 (+) True G92087
TU123937 lncRNA downstream 59967 1189789 ~ 1217204 (+) False G92071
TU123938 lncRNA downstream 59967 1189789 ~ 1301580 (+) False G92071
TU124045 lncRNA downstream 67436 1197258 ~ 1197717 (+) True G92154
XM_039811799.1 mRNA upstream 81006 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 96936 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 150913 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 150913 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 251651 832241 ~ 854498 (+) True wdr18
XM_039811451.1 mRNA downstream 92511 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 192583 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 408177 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 495752 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 506141 1635963 ~ 1637498 (+) True sid1
TU123859 other upstream 347173 722373 ~ 758976 (+) True G92019
TU123860 other upstream 347173 755595 ~ 758976 (+) False G92019
TU123696 other upstream 512272 580807 ~ 593877 (+) True G91903
TU123666 other upstream 539683 509141 ~ 566466 (+) False G91887
TU124034 other downstream 38999 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 73065 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 90988 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 91551 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 111565 1241387 ~ 1256194 (+) True G92169

Expression Profile