RNA id: TU123999


Basic Information

Item Value
RNA id TU123999
length 472
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G92111
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1047536 ~ 1062632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAAAGAGATATTCTCatatcatggtgcaaaggaccctagggtaaattacgccgaaccatcactttaacatttcAATTTCCCTTTCCATTGTTATTCTCTCCTTCTGCCATTCAAGTCTCTCCCTCAATCTTCTTCTTAACATTTCAATTTCCCTTTCCATTGCTATTCTCTCCTTCTGCCATTCAAGTCTCTCCATCAatcctctctcctccatttcAAGTTGCctctcctccatttcAAGTAGCCTCTCCTCCATTTCAAGTCGCCTTAcaggtcttttttttaagtagcaGTGTCTCCATGGACACaactgggttcaggttcaggttcaggtccaGGTTCAGCAGGGTCTGTTCTCTTATGCGTCctctagtcaggccaatgacatcgtgtatagagtcgatgggcggggcttatggctgctgctgctactggagaacagcggtcttctggaagacttggagttaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123991 lncRNA upstream 1437 1045663 ~ 1046099 (+) True G92109
TU123924 lncRNA upstream 63491 923297 ~ 984045 (+) False G92066
TU123971 lncRNA upstream 76015 970873 ~ 971521 (+) True G92095
TU123969 lncRNA upstream 77624 968991 ~ 969912 (+) True G92094
TU123968 lncRNA upstream 81886 964768 ~ 965650 (+) True G92093
TU123945 lncRNA downstream 40560 1103192 ~ 1301580 (+) False G92071
TU123953 lncRNA downstream 43517 1106149 ~ 1129822 (+) True G92078
TU123960 lncRNA downstream 48786 1111418 ~ 1211840 (+) True G92085
TU123942 lncRNA downstream 66091 1128723 ~ 1192296 (+) True G92071
TU124032 lncRNA downstream 90642 1153274 ~ 1154717 (+) True G92144
XM_039811799.1 mRNA upstream 22393 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 38323 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 92300 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 92300 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 193038 832241 ~ 854498 (+) True wdr18
XM_039811451.1 mRNA downstream 159701 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 259773 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 475367 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 562942 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 573331 1635963 ~ 1637498 (+) True sid1
TU123859 other upstream 288560 722373 ~ 758976 (+) True G92019
TU123860 other upstream 288560 755595 ~ 758976 (+) False G92019
TU123696 other upstream 453659 580807 ~ 593877 (+) True G91903
TU123666 other upstream 481070 509141 ~ 566466 (+) False G91887
TU124034 other downstream 106189 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 140255 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 158178 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 158741 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 178755 1241387 ~ 1256194 (+) True G92169

Expression Profile