RNA id: TU124057


Basic Information

Item Value
RNA id TU124057
length 514
RNA type TUCP
GC content 0.62
exon number 4
gene id trmt13
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1220810 ~ 1228679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCAGGATCCGCTCCAGCAGGCCGGTGGTCCGCAGCGCCCCGACCACCACGAGCACCGAGTAatccgccgccgccgccgcggGTCCGGGGGAACCGGGAGAAGAAGCTCCGGGACCGCCGCCCCgctccgctgctgctgctgccgccgccaTCATGGTTTCGGACAGTCCACGAGTGACGTCGACACGTCGACCGATCGTTAGCCCCGCCCCGCTGTTTTGTTTCCTACAGTTGGATGAGCACTCGAACGCAGCACGCATCGTCACTACGTCACTGTCCAACATGGCGGCGCCGCTGCCCGGCAGATGCGGCTTCTTCGTGGAGAAGAAGAAACGTTTCTGTAAAATGATCGTCGCGAGAGGAAAAGTGTTCTGCGGAGAGCACGCGACCCAGGAGGAAggaggcagcagcaggaggatcGCATGTCCTCTGGACCCCAAACACACTGTGAGTGAAGACCAGCTGGACAAACACCTGAAGAAGTGTAACTCCAGAGAGAAGCCAAAGCCGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123943 lncRNA upstream 1924 1218488 ~ 1219449 (+) False G92071
TU123937 lncRNA upstream 4169 1189789 ~ 1217204 (+) False G92071
TU123960 lncRNA upstream 9533 1111418 ~ 1211840 (+) True G92085
TU123962 lncRNA upstream 9895 1182546 ~ 1211478 (+) True G92087
TU124045 lncRNA upstream 23656 1197258 ~ 1197717 (+) True G92154
TU124063 lncRNA downstream 5309 1230117 ~ 1230727 (+) True G92166
TU123954 lncRNA downstream 74350 1299158 ~ 1327538 (+) True G92079
TU124088 lncRNA downstream 88195 1313003 ~ 1357868 (+) True G92177
TU123951 lncRNA downstream 132070 1356878 ~ 1407682 (+) True G92076
TU123950 lncRNA downstream 144214 1369022 ~ 1651313 (+) True G92075
XM_039811799.1 mRNA upstream 196230 1010747 ~ 1025143 (+) True plppr3b
XM_039812306.1 mRNA upstream 212160 983651 ~ 1009213 (+) True med16
XM_039811565.1 mRNA upstream 266137 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 266137 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 366875 832241 ~ 854498 (+) True wdr18
XM_039812460.1 mRNA downstream 97597 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 313191 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 400766 1625574 ~ 1630680 (+) True LOC120565565
XM_039811455.1 mRNA downstream 411155 1635963 ~ 1637498 (+) True sid1
XM_039811456.1 mRNA downstream 642913 1867721 ~ 1889087 (+) True LOC120565570
TU124050 other upstream 17327 1202887 ~ 1204046 (+) True G92157
TU124034 other upstream 51327 1168821 ~ 1170046 (+) True G92146
TU123859 other upstream 462397 722373 ~ 758976 (+) True G92019
TU123860 other upstream 462397 755595 ~ 758976 (+) False G92019
TU123696 other upstream 627496 580807 ~ 593877 (+) True G91903
TU124067 other downstream 16579 1241387 ~ 1256194 (+) True G92169
TU124103 other downstream 239007 1463815 ~ 1535856 (+) False LOC120565410
TU124120 other downstream 354147 1578955 ~ 1910061 (+) True G92201
TU124157 other downstream 472166 1696974 ~ 1804395 (+) True G92234
TU124195 other downstream 642844 1867652 ~ 2000993 (+) True G92264

Expression Profile