RNA id: TU124174


Basic Information

Item Value
RNA id TU124174
length 599
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G92248
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1743775 ~ 1777830 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctgcctgatctccagatgtgttggtgaggagcagcttgtcctgtggaacacctctgacctctggtccaacagctcCTCAGTACCTCAACACCTGAAACAACGACTTGTCAGCTCGGTGaaaacttcttcttacaccatcctccacctgacccattcagactccggccggtaccgagaggagtgttggactgagggcaacgtgacgcatgacaacaacttcactattactgtttgtacttCAATAGATGGGGAAGTTATTCCAGTGAGACTTGGAGATACAGTGGACCTGCAATGTAAGGGAGCAGCTGATAATCTGGATATCCAGTGGCTCAAACAGGACTCTAGATATGAGCAACAAACATGGAGCAGAGTTTTTGGGGACAAGATGACATCAGTGATGCACAATGTTAAaggaagataccaagtggtgacaaacacatcagctcttCGTGTTTCCAACGTCACAGCAACAGACTTTACAGAGTACAGatgtctggtgatgaaccaacagcagtgtgttagcagttaCACTGTAGGGTTGAGACTACAGGTTGAGACAATCTACCgctcagtgggagagaccgCTGTGTTGCCGTG

Function

GO:

id name namespace
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640239.1 lncRNA upstream 43273 1699420 ~ 1700502 (+) True LOC120565416
TU124150 lncRNA upstream 83409 1659798 ~ 1660366 (+) True G92228
TU124143 lncRNA upstream 120381 1621108 ~ 1623394 (+) True G92221
TU124111 lncRNA upstream 155511 1587737 ~ 1588264 (+) True G92196
TU124134 lncRNA upstream 157690 1585119 ~ 1586085 (+) True G92213
TU124185 lncRNA downstream 26639 1804469 ~ 1830857 (+) True G92257
TU124204 lncRNA downstream 97056 1874886 ~ 1876314 (+) False LOC120565570
TU124117 lncRNA downstream 131402 1909232 ~ 1910061 (+) False G92201
TU124121 lncRNA downstream 131402 1909232 ~ 1910061 (+) False G92201
TU124211 lncRNA downstream 175156 1952986 ~ 1953927 (+) True G92274
XM_039811455.1 mRNA upstream 106277 1635963 ~ 1637498 (+) True sid1
XM_039811454.1 mRNA upstream 113095 1625574 ~ 1630680 (+) True LOC120565565
XM_039811453.1 mRNA upstream 168998 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 362861 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 515096 1222333 ~ 1228679 (+) True trmt13
XM_039811456.1 mRNA downstream 89891 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 113724 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 115872 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 203008 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 216989 1994819 ~ 2024965 (+) False LOC120565575
TU124103 other upstream 207919 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 487581 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 518967 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 518967 1221373 ~ 1224808 (+) False trmt13
TU124050 other upstream 539729 1202887 ~ 1204046 (+) True G92157
TU124195 other downstream 89822 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 89822 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 210978 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 294352 2072182 ~ 2076104 (+) True G92293
TU124333 other downstream 588290 2366120 ~ 2368316 (+) False G92333

Expression Profile