RNA id: TU124185


Basic Information

Item Value
RNA id TU124185
length 221
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G92257
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1804469 ~ 1830857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTATGAGATGATCTACGgctcagtgggagagaccgctgtgttgccgtgctcgatcactgactccactgatgaacAGCCCCCACGTTGGTCTAATCGGTTCTCCTCTGACCTAGGACAACTAaaccagactgttccttcagtagaccaaaactactcgctggtgttttcatctctaatgttaaatcactcaggtCGGTACTACTGTGAAGCCTCTATGAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124174 lncRNA upstream 26639 1743775 ~ 1777830 (+) True G92248
TU124172 lncRNA upstream 51517 1733566 ~ 1752952 (+) True G92247
XR_005640239.1 lncRNA upstream 103967 1699420 ~ 1700502 (+) True LOC120565416
TU124150 lncRNA upstream 144103 1659798 ~ 1660366 (+) True G92228
TU124143 lncRNA upstream 181075 1621108 ~ 1623394 (+) True G92221
TU124204 lncRNA downstream 44029 1874886 ~ 1876314 (+) False LOC120565570
TU124117 lncRNA downstream 78375 1909232 ~ 1910061 (+) False G92201
TU124121 lncRNA downstream 78375 1909232 ~ 1910061 (+) False G92201
TU124211 lncRNA downstream 122129 1952986 ~ 1953927 (+) True G92274
TU124212 lncRNA downstream 128995 1959852 ~ 1960134 (+) True G92275
XM_039811455.1 mRNA upstream 166971 1635963 ~ 1637498 (+) True sid1
XM_039811454.1 mRNA upstream 173789 1625574 ~ 1630680 (+) True LOC120565565
XM_039811453.1 mRNA upstream 229692 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 423555 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 575790 1222333 ~ 1228679 (+) True trmt13
XM_039811456.1 mRNA downstream 36864 1867721 ~ 1889087 (+) True LOC120565570
XM_039811232.1 mRNA downstream 60697 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 62845 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 149981 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 163962 1994819 ~ 2024965 (+) False LOC120565575
TU124157 other upstream 74 1696974 ~ 1804395 (+) True G92234
TU124103 other upstream 268613 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 548275 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 579661 1220810 ~ 1224808 (+) False trmt13
TU124057 other upstream 579661 1221373 ~ 1224808 (+) False trmt13
TU124195 other downstream 36795 1867652 ~ 2000993 (+) True G92264
TU124197 other downstream 36795 1867652 ~ 1996750 (+) False G92264
TU124125 other downstream 157951 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 241325 2072182 ~ 2076104 (+) True G92293
TU124333 other downstream 535263 2366120 ~ 2368316 (+) False G92333

Expression Profile