RNA id: TU124204


Basic Information

Item Value
RNA id TU124204
length 253
lncRNA type sense_over
GC content 0.60
exon number 2
gene id LOC120565570
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1867721 ~ 1889087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagagttCTGTCTGAGAGTGGCTGTTTCCTCCTGGTCCTGTTCGGTTCGACCCACCGAGCTCCTCAGTTCTTCCAGTGTCGAGGATCAGCATCTGGACCACAGCTGGACTACCGCCTGCTGACCGCCTCCCAGTGCGTCACACTCTACCAGCAGGCGGTCTCGGTGGAGGGTCAGACTCTGCGCTGTGAGCTCGGCTCAGAGGATCACAGCCGCCAGACGGAGGTCTTCAGAGAGGCTCAGACCTCCTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124185 lncRNA upstream 44029 1804469 ~ 1830857 (+) True G92257
TU124174 lncRNA upstream 97056 1743775 ~ 1777830 (+) True G92248
TU124172 lncRNA upstream 121934 1733566 ~ 1752952 (+) True G92247
XR_005640239.1 lncRNA upstream 174384 1699420 ~ 1700502 (+) True LOC120565416
TU124150 lncRNA upstream 214520 1659798 ~ 1660366 (+) True G92228
TU124117 lncRNA downstream 32918 1909232 ~ 1910061 (+) False G92201
TU124121 lncRNA downstream 32918 1909232 ~ 1910061 (+) False G92201
TU124211 lncRNA downstream 76672 1952986 ~ 1953927 (+) True G92274
TU124212 lncRNA downstream 83538 1959852 ~ 1960134 (+) True G92275
TU124213 lncRNA downstream 83538 1959852 ~ 1960134 (+) False G92275
XM_039811455.1 mRNA upstream 237388 1635963 ~ 1637498 (+) True sid1
XM_039811454.1 mRNA upstream 244206 1625574 ~ 1630680 (+) True LOC120565565
XM_039811453.1 mRNA upstream 300109 1537999 ~ 1574777 (+) True LOC120565564
XM_039812460.1 mRNA upstream 493972 1322405 ~ 1380914 (+) True LOC120566171
XM_039811451.1 mRNA upstream 646207 1222333 ~ 1228679 (+) True trmt13
XM_039811232.1 mRNA downstream 15240 1891554 ~ 1908999 (+) True serpinc1
XM_039811233.1 mRNA downstream 17388 1893702 ~ 1908999 (+) False serpinc1
XM_039811459.1 mRNA downstream 104524 1980838 ~ 1993868 (+) True LOC120565574
XM_039811460.1 mRNA downstream 118505 1994819 ~ 2024965 (+) False LOC120565575
XM_039811243.1 mRNA downstream 174648 2050962 ~ 2071903 (+) False dph5
TU124157 other upstream 70491 1696974 ~ 1804395 (+) True G92234
TU124103 other upstream 339030 1463815 ~ 1535856 (+) False LOC120565410
TU124067 other upstream 618692 1241387 ~ 1256194 (+) True G92169
TU124060 other upstream 650078 1220810 ~ 1224808 (+) False trmt13
TU124125 other downstream 112494 1988808 ~ 2025931 (+) True LOC120565575
TU124251 other downstream 195868 2072182 ~ 2076104 (+) True G92293
TU124333 other downstream 489806 2366120 ~ 2368316 (+) False G92333
TU124352 other downstream 495674 2371988 ~ 2380260 (+) False reep6
TU124353 other downstream 495674 2371988 ~ 2380260 (+) True reep6

Expression Profile