RNA id: TU124328


Basic Information

Item Value
RNA id TU124328
length 1359
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G92333
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2365899 ~ 2369672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaaagagaggatgaagaaagaatgaaacatgaatgagaggatgaagaaagaatgaaacatgaatgagaggatgaagaaagaatggaacatgaatgagaggatgaagaaagaatggaacatgaatgagaggatgaagaaagaatgGATCATGaatgagaggatgaagaaagaatggaacatgaatgagaggatGAAGAAAGAATGAAACATGAATGAGAGGGTGAAGAAAGAATGAAACATgaatgaaaggatgaagaaagaatgaaacatgaatgagaggatgaagaaagaatgGAACATGAATGAAAGGATGAAGAAAGAATGGAACATGaatgagaggatgaagaaagaatgaaacatgaatgagaggatgaagaaagaatgGTGTGTGCAGTATCAGCGGTGAAAGCAGTCTATTCATAACACTGTCCATGATGTCAGAGTAGTGCCTGGTGCACACTCTCTCTGCAGGGGAGTTACAGCAGATTATcctcagagacagacagacaggttagagagacagacaggttagagagacagacagacagacagacagacaggttagacacTGACATGATGTCAGGGCAGTGCCTGGTGCACAGCGTCCCCCACACTCTCTCTGCAGGGGAGTTACAGCAGACTATcctcagagacagacagacaggttagagagacagacaagttagagagacagacagacagagagacagagagacagagagagagaaagagagagagagagagacagagagagagaaagagagagagagagagagagagagagagagagacagacagagagagagacagacagacagagagacagacagagagagagaaagagatagagagagaaagagagagagagagagaaaacagagagagagaaagagagagacagagagagagacagagagagagacagagagagagagacagagagagagaaagagagagagagacagacagagagagagacagacagacagagagacagacaggcagacagatagacagagagagagagacagagagagagaaagagagagacagagagagagaaagagagagagagagacagagagagagaaagagagagagacagagagagagaaagagagagagagacagacagagagagagacagacagacagagagacagacaggcagacagatagacagagagagagagacagagagagaaagagagagagagacagacaaacagagagagagagagagagagacagacagagagagagagacagacagacagacagacagcagagcaCACCTGGCAGCCTCCATGTGTGAACCACCAAATAAGCTGATCAGAGGTAGGACACTTTACATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124294 lncRNA upstream 27034 2265267 ~ 2339571 (+) True G92324
TU124298 lncRNA upstream 42709 2295353 ~ 2323896 (+) True G92328
TU124288 lncRNA upstream 127182 2238384 ~ 2239423 (+) True G92322
TU124240 lncRNA upstream 261557 2104413 ~ 2105048 (+) True G92286
TU124220 lncRNA upstream 272854 2083920 ~ 2093751 (+) False G92278
TU124268 lncRNA downstream 14974 2384646 ~ 2391209 (+) True G92305
XR_005640249.1 lncRNA downstream 65744 2435416 ~ 2440275 (+) True LOC120565447
TU124754 lncRNA downstream 66541 2436213 ~ 2436473 (+) True G92577
TU124764 lncRNA downstream 79911 2449583 ~ 2533166 (+) True G92587
XR_005640247.1 lncRNA downstream 110746 2480418 ~ 2480860 (+) True LOC120565445
XM_039811243.1 mRNA upstream 294702 2050962 ~ 2071903 (+) False dph5
XM_039811242.1 mRNA upstream 303601 2050964 ~ 2063004 (+) True dph5
XM_039811460.1 mRNA upstream 341640 1994819 ~ 2024965 (+) False LOC120565575
XM_039811459.1 mRNA upstream 372737 1980838 ~ 1993868 (+) True LOC120565574
XM_039811232.1 mRNA upstream 457606 1891554 ~ 1908999 (+) True serpinc1
XM_039811244.1 mRNA downstream 2382 2372054 ~ 2379851 (+) False reep6
XM_039811245.1 mRNA downstream 2382 2372054 ~ 2379851 (+) False reep6
XM_039811234.1 mRNA downstream 42559 2412231 ~ 2420605 (+) True LOC120565427
XM_039811235.1 mRNA downstream 54315 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA downstream 54361 2424033 ~ 2427127 (+) True LOC120565428
TU124251 other upstream 290501 2072182 ~ 2076104 (+) True G92293
TU124125 other upstream 340674 1988808 ~ 2025931 (+) True LOC120565575
TU124195 other upstream 365612 1867652 ~ 2000993 (+) True G92264
TU124197 other upstream 369855 1867652 ~ 1996750 (+) False G92264
TU124157 other upstream 562210 1696974 ~ 1804395 (+) True G92234
TU124352 other downstream 2316 2371988 ~ 2380260 (+) False reep6
TU124353 other downstream 2316 2371988 ~ 2380260 (+) True reep6
TU124750 other downstream 164072 2533744 ~ 2582371 (+) True G92575
TU124983 other downstream 612554 2982226 ~ 2983014 (+) True G92770
TU124998 other downstream 641002 3010674 ~ 3014853 (+) False G92773

Expression Profile