RNA id: TU124786


Basic Information

Item Value
RNA id TU124786
length 1104
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G92594
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2497787 ~ 2501122 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agggagagtctaacctatcagctgtgttgtattaacagagagagcctaacctatcagctgtgttgtattaacagagagagactaacctatcagctgtgttgtattaacagggagagactaacctatcagctgtgttgtattaacagagagagactaacctatcagctgtgttgtattaacagggagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagagagtctaacctatcagctgtgttgtattaacagagagagactaacctatcagctgtgttgtattaacagagagagactaacctatcagctgtgttgtattaacagagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagggagagtctaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacaggagagtctaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagtctaacctatcagctgtgttgtattaacgggagagtctaacctatcagctgtgttgtattaacagggagagtctaacctatcagctgtgttgtattaacagggagagtctaacctatcagctgtgttgtattaacaggagagactaacctacactgtgttgtattaacaggagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgtattaacagagactaacctatcagctgtgttgttgatgcctcgagagaacaaaggaagtgactcagagcttgctgtaaagcagtatctctggccgtatatgtgtatgacatcattgacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640251.1 lncRNA upstream 5231 2491509 ~ 2492556 (+) True LOC120565450
XR_005640247.1 lncRNA upstream 16927 2480418 ~ 2480860 (+) True LOC120565445
XR_005640249.1 lncRNA upstream 57512 2435416 ~ 2440275 (+) True LOC120565447
TU124754 lncRNA upstream 61314 2436213 ~ 2436473 (+) True G92577
TU124268 lncRNA upstream 106578 2384646 ~ 2391209 (+) True G92305
TU124787 lncRNA downstream 5917 2507039 ~ 2518417 (+) True G92595
TU124796 lncRNA downstream 50275 2551397 ~ 2551799 (+) True G92603
TU124755 lncRNA downstream 77902 2579024 ~ 2579886 (+) True G92578
TU124804 lncRNA downstream 87494 2588616 ~ 2589069 (+) True G92611
TU124900 lncRNA downstream 225611 2726733 ~ 2727072 (+) True G92695
XM_039811240.1 mRNA upstream 36190 2450531 ~ 2461597 (+) True LOC120565432
XM_039811235.1 mRNA upstream 70660 2423987 ~ 2427127 (+) False LOC120565428
XM_039811236.1 mRNA upstream 70660 2424033 ~ 2427127 (+) True LOC120565428
XM_039811234.1 mRNA upstream 77182 2412231 ~ 2420605 (+) True LOC120565427
XM_039811245.1 mRNA upstream 117936 2372054 ~ 2379851 (+) False reep6
XM_039811224.1 mRNA downstream 85393 2586515 ~ 2593983 (+) True LOC120565421
XM_039811225.1 mRNA downstream 320520 2821642 ~ 2840859 (+) True LOC120565422
XM_039811246.1 mRNA downstream 344622 2845744 ~ 2859118 (+) True LOC120565437
XM_039811247.1 mRNA downstream 498498 2999620 ~ 3002539 (+) True LOC120565438
XM_039811502.1 mRNA downstream 716604 3217726 ~ 3574149 (+) True LOC120565597
TU124352 other upstream 117527 2371988 ~ 2380260 (+) False reep6
TU124353 other upstream 117527 2371988 ~ 2380260 (+) True reep6
TU124333 other upstream 129471 2366120 ~ 2368316 (+) False G92333
TU124251 other upstream 421683 2072182 ~ 2076104 (+) True G92293
TU124125 other upstream 471856 1988808 ~ 2025931 (+) True LOC120565575
TU124750 other downstream 32622 2533744 ~ 2582371 (+) True G92575
TU124983 other downstream 481104 2982226 ~ 2983014 (+) True G92770
TU124998 other downstream 509552 3010674 ~ 3014853 (+) False G92773
TU124988 other downstream 510644 3011766 ~ 3094410 (+) True G92773
TU124992 other downstream 510644 3011766 ~ 3094410 (+) False G92773

Expression Profile