RNA id: TU125133


Basic Information

Item Value
RNA id TU125133
length 236
lncRNA type intronic
GC content 0.48
exon number 2
gene id G92839
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3405063 ~ 3452057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtatgtgtgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtatctgtgtgtgtgtgtgtgtgtctgtatgtctgtgtgtgtgtgtgtgtgtgcgtgcgtgtatctgtgtgtgtgtgtgtgtgtgtctgtatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatatctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125085 lncRNA upstream 5464 3351767 ~ 3399599 (+) False G92826
TU125097 lncRNA upstream 51130 3351767 ~ 3353933 (+) False G92826
TU125048 lncRNA upstream 218487 3186172 ~ 3186576 (+) False G92799
TU125034 lncRNA upstream 232881 3165682 ~ 3172182 (+) True G92786
TU125026 lncRNA upstream 242189 3138369 ~ 3162874 (+) True G92784
TU125186 lncRNA downstream 22434 3474491 ~ 3477249 (+) True G92857
TU125194 lncRNA downstream 30497 3482554 ~ 3485139 (+) True G92863
TU125192 lncRNA downstream 31560 3483617 ~ 3485506 (+) True G92862
TU125193 lncRNA downstream 31560 3483617 ~ 3484392 (+) False G92862
TU125150 lncRNA downstream 44778 3496835 ~ 3563459 (+) False G92845
XM_039811258.1 mRNA upstream 56847 3337832 ~ 3348216 (+) True LOC120565455
XM_039811247.1 mRNA upstream 402524 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 545945 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 564204 2821642 ~ 2840859 (+) True LOC120565422
XM_039811224.1 mRNA upstream 811080 2586515 ~ 2593983 (+) True LOC120565421
XM_039812269.1 mRNA downstream 178127 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 178127 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 178127 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 262862 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 374806 3826863 ~ 3854810 (+) True LOC120565880
TU125102 other upstream 38334 3351767 ~ 3366729 (+) True G92826
TU125014 other upstream 272859 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 310653 3011766 ~ 3094410 (+) True G92773
TU124992 other upstream 310653 3011766 ~ 3094410 (+) False G92773
TU124998 other upstream 390210 3010674 ~ 3014853 (+) False G92773
TU125125 other downstream 33722 3485779 ~ 3490360 (+) True G92838
TU125164 other downstream 105940 3557997 ~ 3577980 (+) False LOC120565459
TU125178 other downstream 140048 3592105 ~ 3593384 (+) False LOC120565459
TU125177 other downstream 148921 3600978 ~ 3606825 (+) True G92848
TU125669 other downstream 744767 4196824 ~ 4217826 (+) True G93150

Expression Profile