RNA id: TU125154


Basic Information

Item Value
RNA id TU125154
length 1252
lncRNA type intronic
GC content 0.46
exon number 3
gene id G92845
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3496835 ~ 3563459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCCTTCAGGCGCTTCACTTTCTTTGTGAGAAGAGCAGCTAATCAGATAGTTAGTTCTTGTTCCTCTTTTATTTTGGCGGTGCTTGACGTTTTGCTTCCTGTCTCTGTTTCAGCTTGGACCTGTTTGTgtgtagaggaggaggaggaggaggaggaggaggaggaggaggaggagagcagaTATGGATCATTAGTAACTCAAAGGACTTTAAGGACGTCTGGTTTCCTCCCGTCCCCGAATAATTCCTGCACGACCGAACACGGAGCTTCGTCGAGGAGCCACGTCACCCAAAACTACAAACCCACCCACTTCCTGCAGCGCTGTGTGGCTTTTAGGAAGAACATTTTGACTTTAACACTTTGATATGAAACAGATTAATTCTAGTAATGCATAAATACTGCTCTCATAGGAACGGGGATGTTACACAGCAAGAGATTAAAACAAGCTTGGAGTTTCTTCTTAAAACGACAGTGTAactttaagagagagagagagagtgtgagtgtgtgcgtgagagagaatgtgtgtgtgagagagagagagaatgtgtgtgagagagagagagtgtgtgtgtgagagagagagagaatgtgtgtgagagagagagagagaatgtgtgagagagagagtgtgtgtgtgtgtgagagagagaatgtgtgtgtgagagagagagagagtgtgtgagagagagagtgtgtgtgtgtgagagagagtgtgtgtgtgtgagagagagagtgtgtgtgtgtgtgagagagagagagtgtgtgtgtgtgtgagagagagtgtgtgtgtgtgtgagagagagtgtgtgtgtgtgtgagagagagtgtgtgtgtgtgtgagagagagtgtgtgtgtgtgagtgtgtgtgtgtgagaagtgtgagagtgtgtgtgagagagagagagtgtgtgtgagagagagagagtgtgtgtgtgtgtgagagagagataatgtgtgtgtgtgtgtgagagagagataatgtgtgtgtgtgtgagagagagataatgtgtgtgtgtgtgtgagagaatgtgtcagggttaatttggggggggtgtgtgtgtgtgtgagaatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaatatatgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtctcaggttGAGCTGTGAGGAGACAGAGAGCTGTTCAAACCCTCTGACTTGATTAAAAAGAGCATCTCAACATTTTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125131 lncRNA upstream 71519 3435996 ~ 3490621 (+) False G92838
TU125132 lncRNA upstream 71519 3435996 ~ 3490621 (+) False G92838
TU125128 lncRNA upstream 71780 3425734 ~ 3490360 (+) False G92838
TU125174 lncRNA downstream 1666 3565125 ~ 3584004 (+) False G92847
TU125175 lncRNA downstream 1666 3565125 ~ 3584004 (+) True G92847
TU125173 lncRNA downstream 3022 3566481 ~ 3595388 (+) True LOC120565459
TU125208 lncRNA downstream 5260 3568719 ~ 3585889 (+) False G92875
TU125209 lncRNA downstream 5260 3568719 ~ 3586637 (+) True G92875
XM_039811258.1 mRNA upstream 213924 3337832 ~ 3348216 (+) True LOC120565455
XM_039811247.1 mRNA upstream 559601 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 703022 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 721281 2821642 ~ 2840859 (+) True LOC120565422
XM_039811224.1 mRNA upstream 968157 2586515 ~ 2593983 (+) True LOC120565421
XM_039812269.1 mRNA downstream 66725 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 66725 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 66725 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 151460 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 263404 3826863 ~ 3854810 (+) True LOC120565880
TU125125 other upstream 71780 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 195411 3351767 ~ 3366729 (+) True G92826
TU125014 other upstream 429936 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 467730 3011766 ~ 3094410 (+) True G92773
TU125178 other downstream 28646 3592105 ~ 3593384 (+) False LOC120565459
TU125177 other downstream 37519 3600978 ~ 3606825 (+) True G92848
TU125669 other downstream 633365 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 721443 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 726882 4290341 ~ 4293890 (+) False LOC120565391

Expression Profile