RNA id: TU125175



Basic Information


Item Value
RNA id TU125175
length 278
lncRNA type sense_over
GC content 0.57
exon number 2
gene id G92847
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3565125 ~ 3584004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCATACACCTGCTAGAGAGTGGAGGAGACGGATGCTCGGAAAGGTAAACCCGGGCGCTCGGTGACTCACTCTGTCCCGGCAGAACCAGTAGAGTCccgggggtgtgtgtgtgtgtaagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgagtgagtgagtgagtgagtgtgtgtgtgtgtgtgatgaggcCGTAGTGCACGAGCTCCAGGATGAACATCCTGGTGGCCAAGCTGCTCGGCCTGCTGGGAATGTTTGGCCTGGTTCTGGCCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU125150 lncRNA upstream 1666 3496835 ~ 3563459 (+) False G92845
TU125159 lncRNA upstream 1666 3496835 ~ 3563459 (+) False G92845
TU125149 lncRNA upstream 1666 3561035 ~ 3563459 (+) False G92845
TU125157 lncRNA upstream 1666 3561035 ~ 3563459 (+) False G92845
TU125143 lncRNA upstream 1666 3562140 ~ 3563459 (+) False G92845
TU125212 lncRNA downstream 131 3584135 ~ 3584842 (+) False G92876
TU125213 lncRNA downstream 131 3584135 ~ 3584842 (+) True G92876
TU125182 lncRNA downstream 18363 3602367 ~ 3619368 (+) True G92853
TU125215 lncRNA downstream 18785 3602789 ~ 3603330 (+) True G92878
TU125216 lncRNA downstream 23307 3607311 ~ 3613096 (+) True G92879
XM_039811258.1 mRNA upstream 216909 3337832 ~ 3348216 (+) True LOC120565455
XM_039811247.1 mRNA upstream 562586 2999620 ~ 3002539 (+) True LOC120565438
XM_039811246.1 mRNA upstream 706007 2845744 ~ 2859118 (+) True LOC120565437
XM_039811225.1 mRNA upstream 724266 2821642 ~ 2840859 (+) True LOC120565422
XM_039811224.1 mRNA upstream 971142 2586515 ~ 2593983 (+) True LOC120565421
XM_039812269.1 mRNA downstream 46180 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA downstream 46180 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA downstream 46180 3630184 ~ 3633365 (+) False LOC120566051
XM_039811503.1 mRNA downstream 130915 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 242859 3826863 ~ 3854810 (+) True LOC120565880
TU125125 other upstream 74765 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 198396 3351767 ~ 3366729 (+) True G92826
TU125014 other upstream 432921 3125889 ~ 3132204 (+) True G92782
TU124988 other upstream 470715 3011766 ~ 3094410 (+) True G92773
TU125178 other downstream 8101 3592105 ~ 3593384 (+) False LOC120565459
TU125177 other downstream 16974 3600978 ~ 3606825 (+) True G92848
TU125669 other downstream 612820 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 700898 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 706337 4290341 ~ 4293890 (+) False LOC120565391

Expression Profile


TU125175 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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TU125175 Expression in each Bioproject

Bar chart with 6 bars.
TU125175 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.