RNA id: TU125220


Basic Information

Item Value
RNA id TU125220
length 2305
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G92881
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3644289 ~ 3647676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTTTCACATTCAGCAGAGACCCCAAATGTATGTACATCTCTTATAACAGTGGTTTTTAAATAACGTTCCCCCTTCGAACAGTGTTTTTAAGACATGTAGGTCCGTGTAACGctcatcagttcaattttctaagcacaaatggacagttggaaaaacagaaaaatgggttcaaatatccaattttcatttttttccaccttgacaaattaaaatattggatctttaaactgtttttagactgtatataaccatagactgtatataaccatagactgtatataaccatagactgtatataaccatagactgtatataaccaaagactgtatataaccatagactgtatataaccatagactgtatataaccatagactgtatataaccatagactgtatataaccatagattgtatataaccatagactgtatataagcatagactgtatataaccatagactgtatataatcATTGACTGTATATAATCATTGActgtatataaccatagactgtgTATAACCATAGATTGTATATAACCATAGATtgtatataaccatagacagtataaccatagactgtatataaccatagactgtatataaccatagacagtatataaccatagactgtatataaccatagactgtatataaccatagactgtatataaccatagacagtatttaaccatatacagtatataaccatagactgtatataaccatagactgtatattaccatagactgtatattaccatagacagtatataaccatagactgtatataaccacagactgtatataaccatagactgtatataaccatagactgtatataatcATTGACTGTATATAACCATTGActgtatataaccatagactgtatataaccatagattgtatataaccatagacagtatataaccaAAGACTgtatataaccaAAGACTGTATATAATCATTGACAGTATATAACCATAACCacgatatttgaacccatttttctgtttttccaactgtCTGTTTGTGCTCAGAACACTGAACTGATGAGAGTTAGACCGATCCATGTACCAGCACGAATAATGTTTGgtagaaaaaataaaagtctgtataaagaggaagaacacagcgatgtcagcgatagatttactaaacaacagcttCGGACCTGGAAAACTTTTAGATGCTGatgagaaaaggagacaaatttggaaaaagacggtagaaagaaggaggCGAGGCGAGAATAGGTTGAAAATAGTCACAAAAACTTCaataaaagagacacaaaatttgaaaaaagtgacagaaactttgaagaaaacaagacaatagaaaaaagtcagaaagaaagacaagaaGAGGTCCAAACAAACGACAAGACCttcaaaaacagcgacaaaatctttgaaaaaagcctgcagtcctccaaagtacccctagggggacacgtaccacctgcagtcctccagagtacccctagggggacacgtaccacCTGCaatcctccagagtacccctagggggacatggatccactgcagtcctccagagtacccctagggggacacggatccactgcagtcctccagagtacccctagggggacacgtacccactgcagtcctccagagtacccctaggtgGACACGTACCCCCAGAAGTACTCcacagtacccctagggggacacgtaccccctgcaatcctccacagtacccctagggggacacgtaccacCTGCattcctccagagtacccctagggggacacgtaccacctgcagtcctccagagtacccctagggggacacagacccactgcagtcctccagagtacccctagggggacacgtaccacctgcagtcctccagagtacccctagggggacacggaaccactgcagtcctccagagtacccctaggtgGACACGGACccactgcagtcctccagagtacccctaggtgGACACAGACccactgcagtcctccagagtacccctagggggacacagacccactgcagtcctccagagtacccctagggggacacgtaccacctgcagtcctccagagtacccctagggggacacagacccactgcagtcctccagagtacccctagggggacacagaCCCCCTCACAAGTAGTTTTCGTCGTCGTCGAAGTCTTTGAAAGCAGGGTACCAGTAGCTGTCCTTTCTCTGCGACTTTCGGCTCTTGGGGGCGTTTTCGTTCTTCAGTCGCTGGACTTTGTTGATCCAGGAGATCTGGGCGGCGGCCAGGCCGATCATCAGGACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125179 lncRNA upstream 18354 3620067 ~ 3625935 (+) True G92850
TU125182 lncRNA upstream 24921 3602367 ~ 3619368 (+) True G92853
TU125216 lncRNA upstream 31193 3607311 ~ 3613096 (+) True G92879
TU125215 lncRNA upstream 40959 3602789 ~ 3603330 (+) True G92878
TU125167 lncRNA upstream 48901 3578113 ~ 3595388 (+) False LOC120565459
TU125239 lncRNA downstream 34697 3682373 ~ 3702717 (+) True G92883
TU125243 lncRNA downstream 69429 3717105 ~ 3731760 (+) True G92885
TU125245 lncRNA downstream 115396 3763072 ~ 3769824 (+) True G92886
TU125249 lncRNA downstream 134385 3782061 ~ 3783685 (+) True G92887
TU125231 lncRNA downstream 141811 3789487 ~ 3807454 (+) False frem1b
XM_039812269.1 mRNA upstream 10924 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA upstream 10924 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA upstream 10924 3630184 ~ 3633365 (+) False LOC120566051
XM_039811502.1 mRNA upstream 70140 3217726 ~ 3574149 (+) True LOC120565597
XM_039811258.1 mRNA upstream 296073 3337832 ~ 3348216 (+) True LOC120565455
XM_039811503.1 mRNA downstream 67243 3714919 ~ 3823782 (+) True frem1b
XM_039811967.1 mRNA downstream 179187 3826863 ~ 3854810 (+) True LOC120565880
XM_039811203.1 mRNA downstream 484187 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 493902 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 498817 4146493 ~ 4151003 (+) True LOC120565404
TU125177 other upstream 37464 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 50905 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 66309 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 153929 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 277560 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 549148 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 637226 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 642665 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 1063885 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2387693 6035369 ~ 6040119 (+) False G93613

Expression Profile