RNA id: TU125249


Basic Information

Item Value
RNA id TU125249
length 512
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G92887
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3782061 ~ 3783685 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgttgtgtctgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtctgtgtgtgtgtgtgtcctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125245 lncRNA upstream 12237 3763072 ~ 3769824 (+) True G92886
TU125243 lncRNA upstream 50301 3717105 ~ 3731760 (+) True G92885
TU125239 lncRNA upstream 79344 3682373 ~ 3702717 (+) True G92883
TU125220 lncRNA upstream 134385 3644289 ~ 3647676 (+) True G92881
TU125179 lncRNA upstream 156126 3620067 ~ 3625935 (+) True G92850
TU125231 lncRNA downstream 5802 3789487 ~ 3807454 (+) False frem1b
TU125255 lncRNA downstream 43627 3827312 ~ 3877372 (+) True G92892
TU125260 lncRNA downstream 82021 3865706 ~ 3924299 (+) True G92894
TU125257 lncRNA downstream 92528 3876213 ~ 3889141 (+) True G92893
TU125281 lncRNA downstream 197222 3980907 ~ 4026271 (+) True G92915
XM_039812269.1 mRNA upstream 148696 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA upstream 148696 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA upstream 148696 3630184 ~ 3633365 (+) False LOC120566051
XM_039811502.1 mRNA upstream 207912 3217726 ~ 3574149 (+) True LOC120565597
XM_039811967.1 mRNA downstream 43178 3826863 ~ 3854810 (+) True LOC120565880
XM_039811203.1 mRNA downstream 348178 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 357893 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 362808 4146493 ~ 4151003 (+) True LOC120565404
XM_039811210.1 mRNA downstream 377224 4160909 ~ 4161442 (+) True LOC120565402
TU125177 other upstream 175236 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 188677 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 204081 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 291701 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 415332 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 413139 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 501217 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 506656 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 927876 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2251684 6035369 ~ 6040119 (+) False G93613

Expression Profile