RNA id: TU125257


Basic Information

Item Value
RNA id TU125257
length 1084
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G92893
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3876213 ~ 3889141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttgtaaaaaaaataattagagattttttttctcaccttCTTGTCTGGCCACAGTTTCCTTTTTGTTATCCAACTCGTTCTGTTCCTTTTGCTGTTCCTCTAACATCTTCTCCTGTTCTTTCTTCaactctttgtctttcttttcatttatttccttCTCCTTCTGTTCCTTCTCcctctttattttctcttcacTCTtactctcctttcctttcttttcctttctcccctcctcTGTCCCCTCATTGTCTCTCTGTTCCTCATCCCCTTTTATCTCCTTGCTTCTTTTCAACTCCGATGTTCTCTCCATCTCTACCCTactattttcttctttctcccttttagCCCGGAATTTTTCCACTATATTTCGAAGCCTTTCTTCATATTCTGCTCGTAGATTCATCTccatttcttctttctctttgcgTATttgctcctctttctctttcagtaTGCGTTGTTTCTCCTCTTCGATTGCCCTTTCTGCCTCTTGGAACATTTCATTGGTGTAGTGGCTTCCTCCGTTTTTCTGGACTATGGTTCTGATCTTCTTAAGCAGCTCGGTGACCTGCGAGCGATTCTCCAGATCATTATTAAAGACATGGTACTGACCATTGCACCTGGCCACAAGTTCCTGCAGGTCTGGGCTGTCCTTTAAAAACTCCTCAATGGTGGTGTTTTTAAGAAGGTCTCCATGAGTAAAGAgaaccatgctgtatttgtctGCAGCCTGGCCAAACATTTCTCGGATCTTCTGCACTGTCTGCTTTTCCTCATCTGTGAATCTGCCGAGCGCGATGACAACCAGGAAGACATGGGGTCCAGGAGAAGAATAGGAAATGCACTGGCTTATGTCTTTATGTGTTTTATCCTGGGCCCACCTGGTGTCAAAGAGACCTGGGGTGTCAATAACAGAAACCTTTTGTCCATCCACTTCAGCATAGGCCTTAGAACACTCATCAGTCATAGACGTGGCGCTGAACTTTGATTCAAAGCAGTTATGCCCAATAATGGTGTTTCCTGTGGCACTCTTCCCAATTCCTGTCTTCCCCACCATCACAATCCTCAGCTCCTCATCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125231 lncRNA upstream 68759 3789487 ~ 3807454 (+) False frem1b
TU125249 lncRNA upstream 92528 3782061 ~ 3783685 (+) True G92887
TU125245 lncRNA upstream 106389 3763072 ~ 3769824 (+) True G92886
TU125243 lncRNA upstream 144453 3717105 ~ 3731760 (+) True G92885
TU125239 lncRNA upstream 173496 3682373 ~ 3702717 (+) True G92883
TU125281 lncRNA downstream 91766 3980907 ~ 4026271 (+) True G92915
TU125636 lncRNA downstream 213713 4102854 ~ 4103868 (+) True G93128
TU125670 lncRNA downstream 279180 4168321 ~ 4168724 (+) False G93151
TU125671 lncRNA downstream 279180 4168321 ~ 4197972 (+) True G93151
TU125668 lncRNA downstream 285461 4174602 ~ 4217826 (+) False G93150
XM_039811967.1 mRNA upstream 21403 3826863 ~ 3854810 (+) True LOC120565880
XM_039811503.1 mRNA upstream 52431 3714919 ~ 3823782 (+) True frem1b
XM_039812269.1 mRNA upstream 242848 3630184 ~ 3633365 (+) True LOC120566051
XM_039811203.1 mRNA downstream 242722 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 252437 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 257352 4146493 ~ 4151003 (+) True LOC120565404
XM_039811210.1 mRNA downstream 271768 4160909 ~ 4161442 (+) True LOC120565402
XM_039811193.1 mRNA downstream 395614 4284755 ~ 4294092 (+) False LOC120565391
TU125177 other upstream 269388 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 282829 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 298233 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 385853 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 509484 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 307683 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 395761 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 401200 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 822420 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2146228 6035369 ~ 6040119 (+) False G93613

Expression Profile