RNA id: TU125260


Basic Information

Item Value
RNA id TU125260
length 3176
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G92894
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3865706 ~ 3924299 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagcagctccagcatATATAAACATGTTTGTAATATATAAattcataataaaataattaataattcatgattttttttttttatccagctTGTGTTCCTTTTGCTGTTCCTCTAAAATCGTCTCATGtttcttcatcaactctttctttctttccccttccttctccctctttattttctcttctctcttagtccccttccctttcttttccttttccttgcCCCTTTCCAACTCACTTTCAGCCTCTAATTTGTTTTCTTATCCCTCCTGGAAAGGTACAACTGGGTACCCTTATTGGTACAAAGATTGACCAGGACAACCGAGCACTCAACTTAAATGTTGTTGTTTAAACGTTATAAGATAGTTAATTCAATATTTTGTTAATGCCAATCATTACGGACCTCTGTTATTGAATAAAAATCAGATACATACCTTTGAGTAATATGTTTGAAAGCCCCTGTATACGTTTTATAGGCATGTTGGTGAGACATTTTGGGATGGACATGGACAGACGCAGACCTGGGCAGATTACAAAATGAATGTGCCATGAAAATGGACTGTCATATCCTCTGAAATAGGTTTGACTTTGCAAGTCTGACTGGGCtatatgatttaaaaaacaggaagcaagtcaagtcaagtttatttatataccacatttaaaacaaccagagttgaccaaagtgctgtagaaATTGAAGATCACAACACAccaagtaaaataaaatcaaaataagtcataaaatagcacaaataaaataaaactgctaTAAAAGCAAGACAATGCAGTACaacatataaaaataaaagcattttaaaataattgaataaaaaaatatattaaaatgctAAAAACCTCTAAGAAAGGCCATTGAAAACAAATATGTCTTGAGATGTGTTTTAATCTATCAGTGGAGGGGGGACATCTGAGACAAAGTGGAAGATTATTACAAAGCTTTGAAGCTTCCACAGAAAAGGCACGATCTCCCTTACCCACTAACCTCGACCGAGgaaaagttaaaaacaattgattCAAGGATCTAAGGAGGCCTGGAACTGGAGTAGATATATAATTCTGATATATACTGCAGATCATGACCATGTTTggctttaaaaacaattaaaagaatcttaaaatcaatcctgTATTCAATAGGTAGCCAATGCAGGGATGCTAGAATCGGTGTGATGCTTTCTGTTTTCCTTGTGCCAGTCAGAAGTCTCGCTGCAGCATTTTGTACCAGCTGCAGGCGAGACAATGAGGACTGGCCAACACCCAGGTAGCAACACATATTCTAGAGTTATCCATACAAATATGCTAAACAAAGCAATGAAATGAAAGGGTTAACCCTATAATCAAACATTTCTTACAGTGCACGTCTTCACATTATTAAAAATGGTCATAGCAGTGCAAAGAAATCAGTTGATCTTTTTTGGAACATTTACTGTCTTAGTTATCATTTAAAGTGTGTTTGCACACAAGGGCAACCTTGAtgctttgaaaaaaatgtatgcaaCTTGGACTAAGGCATCAATAATGTAAAGATATGCCATCACCTGGCTTCACCAGATTTTGAGAAAGTTATCAGCTGATTTTCAGGGCAATGAGTAaccacaaacacccacacataaATACCAATGCTTTCCTGGTGCTACACATCTTTATATGGCTTTATACATTCAAAACACATCCATTTATGATTGTACTCTCAaatcagagaaagaaagataagCCTGGATGTGTATGAAGTTGTTTCAGTTACTGTACAGTTTAGTTAAATCATACTCAAATGTTCAGCCTTGGTGATTAAATGTGAACCAATGCATGTATAGTAATACTAATATAAAAGTCTGTATTTTTAACACTAGAACAGCCCGAGCCGTTTAACGTTGTGATTAAtgctagtctggatcaaccACGGTTCAAAACACAGTTTATAATTTACACTCCCCGCCTTGTTATAAAATCCtacacttgtttttattttctgctttctttCTGGCCATTCTGTCATACTTTTCCTCCAACTGTTTAATTTGCTCTTCGAGAACTCTTTCATGCTCTGCCTTTATTTGTTGAATCATCTTCTgctgctcttcctcctcttttttcttttccatctccttcctttcctcctcccttctcttctcccattctttcctctcctcttttttctctACCCACTCCTTCTCTATATCCAGCGTTCTCTTTTCCAAATCTATCTGTAGCTTCTCCATTGTGCTGTTTAATGCTTCGTTCTTCTTCAACATCTGCTCCATTTTTGTCCTGTCCCTATCCCTTGCCATCTCCATCTCCTTCATTTTCCTCTCACTTTCCCTCTTCAAAACAATAATATCATGTTCTAccctttttctgtctcttctctcttcctcaatTTCAGCCTGGAATTTCTCAGTAATGTTTTTGATTATTTCTTCATATTCGACTCGTAATTTCTTCTCCAGTTGTTCTTTCTCTTTGCGTATttgctcctctttctctttcaggaTGCGTTTTTTCTCCTCTTCGATTGCCCTTTCTGCCTCTTGGTACAGTTCATTGGTGTAGTGGCTTCCTCCGTTCTTCTGGACTATGGTTCTGATCTTCTTAAGAAGCTCGGTGACCTGTGAGCGATTCTCCAGATCATTATTAAAGACATGGTACTGACCATTGCACCTGGCCACAAGTTCCTGCATGTCTGGGCTCTCCTTCATGAACTCCTCAATAGTGGTGTTTTTAAGAAGGTCACCATAAGTAAAGAgaaccatgctgtatttgtctGCATCTTGGCCAAACATTTCTTGGATCTTCTGCACTGTTTGCTTTTCCTCTTCTGTGAATCTGCCCAGCACGACGACAACCAAGAAGATATGGGGTCCAGGTGAAGAATAGGAGATGCACTGGCTGATGTCTTCATGTGTTTTATCCTGGGCCAACCTGGTGTCAGAGAGACCTGGGGTGTCAATAACAGAAACCTTTTGTCCATCCACTTCAGCATAGGCCTTAGAGCACTCATCAGTCATAGACTTGGCGCTGAACTTTGATTCAAAGCAGTTACGCCCAAGAATGGTGTTTCCTGTGGCACTCTTCCCAATTCCAGTCTTCCCCACCATCACAATCCTCAGCTCCTCATCATTTCGTAGAATAGCTTCTGTTTGAAAGGATGAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125231 lncRNA upstream 58252 3789487 ~ 3807454 (+) False frem1b
TU125249 lncRNA upstream 82021 3782061 ~ 3783685 (+) True G92887
TU125245 lncRNA upstream 95882 3763072 ~ 3769824 (+) True G92886
TU125243 lncRNA upstream 133946 3717105 ~ 3731760 (+) True G92885
TU125239 lncRNA upstream 162989 3682373 ~ 3702717 (+) True G92883
TU125281 lncRNA downstream 56608 3980907 ~ 4026271 (+) True G92915
TU125636 lncRNA downstream 178555 4102854 ~ 4103868 (+) True G93128
TU125670 lncRNA downstream 244022 4168321 ~ 4168724 (+) False G93151
TU125671 lncRNA downstream 244022 4168321 ~ 4197972 (+) True G93151
TU125668 lncRNA downstream 250303 4174602 ~ 4217826 (+) False G93150
XM_039811967.1 mRNA upstream 10896 3826863 ~ 3854810 (+) True LOC120565880
XM_039811503.1 mRNA upstream 41924 3714919 ~ 3823782 (+) True frem1b
XM_039812269.1 mRNA upstream 232341 3630184 ~ 3633365 (+) True LOC120566051
XM_039812272.1 mRNA upstream 232341 3630184 ~ 3633365 (+) False LOC120566051
XM_039812271.1 mRNA upstream 232341 3630184 ~ 3633365 (+) False LOC120566051
XM_039811203.1 mRNA downstream 207564 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 217279 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 222194 4146493 ~ 4151003 (+) True LOC120565404
XM_039811210.1 mRNA downstream 236610 4160909 ~ 4161442 (+) True LOC120565402
XM_039811193.1 mRNA downstream 360456 4284755 ~ 4294092 (+) False LOC120565391
TU125177 other upstream 258881 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 272322 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 287726 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 375346 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 498977 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 272525 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 360603 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 366042 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 787262 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2111070 6035369 ~ 6040119 (+) False G93613

Expression Profile