RNA id: TU125281


Basic Information

Item Value
RNA id TU125281
length 5491
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G92915
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3980907 ~ 4026271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTAATACAAATTTCTACAGACTCAAAGTTACAATGATACGATACAATAACAACAATTAAGACAGAACCCATGATGTTTATTGCATAGTAATGTTCTTTATGAATACATACATTTCAGTGGCATGTCcagacttttttattactggGGTGGCCCAAGTTGGGCACCAATTAATGGCATGAAGTATGAGtggccacacacaaacaattaaCAGATAATAGACCTACCAATCACAACACAGTGGGaacacacaaatgtaaaataaagcttcCAAACTTTATTCTTAAAGTCTTAACAAAGAAAGTGTAGCTCCAACAATAGGCCACATACATAATAAAACGATGCACATTCAAAAAACAATCACAGTATGAAttacaaacaaactaaaaataacaaaacctGTGTGGACAAAATATTATGCCAAAGTTAAAATCTACATAAAATACAACATAATATAAAGTAAGATTCTGGCTTTGACCAGGCAGATGGGTTAATAGACCTACCAATATATTTGCATAcaataaaacaagaaaatatAAAGTAAGGTTCTGGCGCTGACCAGGCAGATGGGTTAATAGACCTACCAATCAACAAATGTTAAAGTATGTTATTGTCAagttaaacaaaaaatataaaaaagtgctagattaatggTTTTCAACCGATTAAGTCATCAAAAAGGAAGTATAGCTCCAAAAGTTAGCCacatacaaaagaaaacaatgcaTATTCCAAAACACAATCACATTATTAAGTattaacaaaattaaaataagtcCATGTTAACAAACGTGTggaaaacaatcaaacaaaatTTAAATCtacaatgcaaaaaaatatgaactaaagtCCCACATCTGACAGGGCAGATAAATAGACCTACCAATCATAAGACAACTTGTTTaataatgtaaatgtagtttaataatgtaaatgtaaagtcaAACAAAATGCAAACATGCAGAATAAAACAATGCACTTTCAAAAATACAGTTACAATATAAAGtgcaaacaaaattaaaataaataagccTGTGAAGACAAAATACCATAATGACAAACAGCTAGGGCTACATGATTGGCATTCAACTCTACAATCTGTCTTAcatgtcatttgtttttatgAGGTGTGTTTTTCCATCACAGTGGCTGCCACATctattttttcactttgtacagTTCATGCGTCAGTGCTTGCGTATACACTTAATCACTATATTATATTTGCACTTGCAGATAAATGAATAGGAGAAAGTTTGGCATGTTTGCCACATCCGACAACaatatcaaaaaataaaaattccttAAATTGGATAACAAATGTTTATAAAAGATGAAATGGcataaaaagaatataaaaacaaaccTACAGAATTGGTCTTTGACCCTACAATCTGTCTTAcatgtcatttgtttttatgAGGTGTGTTATTCCATTACAGTGGCTGCCACATctattttttcactttgtacagTTCATGCGTCAGTGCTTGTGTATACACTTaactaatatattatagttGCACTTGCAGATGAATGAATAGGAGAACGTTTGGCAAGTTTGCCACAtctgaaaacaaaatcaaaaaactaaaaatcctTAAAGTGGATGACAAATGTTTACAAAAGATTAAATGGcataaaaagaatataaaaacaaacagtatatataacaaaaatacagCTAGACCTACAGGATTGGACTTTGACCCTGCAGTCTGTCTTACTTATTGTTTGATTATGTTTTTATGAGGTGTGTTTGAAATTCCATCACAGTGAGTCACTGGATACCACACCTATTTTCACGCTGTACAGTTCATGTCTCAGTGCTTGTGTTGCACTTTTGTGTCTGATCAACTACCCTAGTTTTCATACTGGATGTCATATGCCAGGAGTCCATTAATCGCAAAACCAAGGTAGAAAGAAACCTTTTCTCTACTGAAACCATGTCGTATTCCACCAATAAGAGCAGGACGAACAGGGATTTTCAGTGTGCCATAATTGGCGAACACCTGTCCTTCCTCAGTGATTCCAGTGACTCGATGAAGGCGGCTAGTGATTTGCTGTTCCTTAAATATGTCGCCGTTCCACCAAAGTTGTGCCAAGATATCACGAGGAATTTTAAATGTCCAATCCAATTTACGTTTAGAAACAAACCTATCAAGTCCATCTCCTTTTCCTAAGTAGAAGTGGGCAATTGTGCTTCTTTTTCCACAATGTTTTGCCAGAAGTTTGCGGGATGAGTTTCGAATTGCAGTCACATAGGTCCCAATATCAGTGTTTTTCTCAGTTGGACTTGGCCAGAATAACAACAGAGCCAGGTAGTACGGGTCTGGGAAAGGATACCGAAGTCCTACATCTTGCAGTGTTTTCAAAAGTAGATCAGAGAGTTGGCTGTGACTTTTGACATGTTtagattttggtttcaaaagGTAAAGAACTATGTTTGACAAAATGTAATTGATTGTTTccttcgttttttgttttttgttgacaaattgttgtttttgtaaaaatgcaTAGCATTCTGTGATCCTCTCAATCTCTTCGGCAGGTTTGTCCAAATGCTGAAGAATCCCTGCAAATGTATCTGCTTGTTTACCTTCAAGAAACAATCTTTTTTCATGAATGTCGATTTCCAAATTGAGATTAGGATTGTTTTGTCgttcttttttcatttcctctggTGCAGTGCAAAAAAGAGTTACATACTTTTTAAAAAGACCACAGACGGCCCAACGATTCTTTGAATCATATTCTGAATTGTTCCCTTTTGTATACGTGAAGTAACGGTTAATAAGGTCAAATGTTTCTTTTACTTCAGTTTTCAAACTGAGGAGAAACGGTTCATGCTCTTTGATGATCGCCACGTATCTGTTGTTGATCTTATTCTCTTCTTTTTGCACGCTGGTGATTGGGATTATCTTTTGAAGGAAACTCTGGAAGTACTTCTTCCTCATCGGATCATTTCCCTCAAAGAATGGCAATCTGCTCAATATGTCAAATACCAGAAAAGCTATTTCCAGCACACCCACATAGCCATAGACTAATGACTTTCTTTGGTAGTCATCTGATGCATCATCAGCAACTTCCTCCTCAGGTTCATCCTCTGTATTTGCCAGCTCTTGAGCCCTTTTAAACGCTCTGATAGCATTATCCGCTattttaatgtttgtgtttaaGTCTTCTGGATTGCGTGATGTCTCTTGCttttctctgttgttgttggatGTTAAATTGCTTTTGTGAATCTGCCCAATTGTGTCCAATGTGCatgtattttctttaattttcttGGCAAATTCGGCCCATTTTCCAGCCTCTGGGAATTCACTTTCTTTGATATACAAATATCTCGCCAGTGCCTGAGGAATAGATGCACTTTTTTCAAACCTGGATGATGCTTTCAAAAAGATTTTTTGGACAGTTTGTCTCCCTTCCTGGTTGTGGATTTTATCTATGAGAGGAGAAAATAGTTCTCTCTCTACTCCATCTTTCTTTCGCTGCCTTTCAATCAACATTTTTTGAATTGAGTCTCTGTGTTTGGCAACTCCAACATTGAAGAACAGATCACAGTGAAGAATCTCCATAGTGATAtcacttacttttaaaaagcagcttcTCTCCAACTCTTCCAGGCATGCAGATGCTATGGAGTGATGAAGGATTCGGATCCCTTTGTATCCTCCCCATTCTTCAACTTTGTCTATGATGAGAGTGTTTGAATATCGCTTCATTCTGTCCATTACACTATCCTCTTTCCAGTGAATCACTTTCATGCCCAAAAAATCttcagagagtgagagagagatttcAGATTCTGCCACATAAGTGTTCAGTAACGCTAGAAAGGCAAACAGTCGGCCTTCCTTTGAACTGAAATCAAAGTTTTCCAGTGTGTTACGGGCAAGATCATCAATGTACTTTTTGTCAAAATTGCTCTTCATGATCATGAAGCTGTAAAAGTTTTCAGGTTTTTCATGAGTTTCTTTCAGCTCTTTGagttttttctcaaaatgattTTGTTCTTCTTTAGTCAATGAAGCAGTAATGAATTGACTTGGATTGTGTCGTTTGTATTGCTCCTTTGGGCTATTGGAACGAACGCAGTTGAGGATGATGACTTTGCAATTTTTTTCGTCATCCACATTTATGTTACAGTTATCTTCTACAGCTTGACGGATGCTGCTTACTAGTTCATAATGATTCTCTGTTTCCTTTGAGTCATCAACTAACAGCAAAACAGGAGAAGGTCTATCGCTTTCAAGATTCATCAGTTTAACAACTTGGATGGCAACGTCTGCTTTTGGATGTGTATTGTCTTTCAACACGGCACATCTGGACTCCTCACGAAGATCCCACATCAAATGCATTGCTAAGGTGCTACCACCACAGCCTGGGTGGTGAAACAGATTGAACAGAATGCACATGTCTTTTGAAGCTCTCAACTGAGACGTAATCATCTTCTTCACATTTTCATACTTGTCCCGCTTGACAAATGgcttgtctttgtctttgtcacaGAAGTAGAAGTTCCACCATTTGACTTTGCCTCCTCTGTAGAATTCTTCCTCAACTCTGATTCTGAAGTCATTAAACTCTGGACTGTTTTCATCAtaaatgttttcacactgatTTAGACATAAAATATCTAGAGCTGTCAATAAGTCTTCATCCTTCTGCTTTAGAACAACAGAACTGGAGTCAGAAGAGGGGAGCAGCCTTCCAGATGACTGATTGAATGGTCCCAGTGCCATTACTGTTCCATTGACCTCGCTGAGGGTCAGCTCATATATAGATCGTGGGTCGATGTCGGATCCACACTTTGCTTGTATCATCTCCTTCCATTTTACATACATGCTCCGAGATGCACTAATAGTAATGATGTTTTCCTCTTCAGTCTGCTTTATAAAGGCCTTGTAGATCTCAAAGATTGGGTCTTCCTCAGTGTCCACAGGTGAAAGTAGGAGGAATATGATGAGGCATCTTCCAGCGAGAAAAACCTCAGGATTGCAAACGAATGAAACCAAGTTTTCTACATCTCTGCAAGATTTCTTCAGCCAGTTGTTATAATCTAACTCCTTGTCTGAGTCACTGTCAAGGTCATTTCTGCCATTGGAGAAGACCCAGCTGGTCTGTTTGTAGAGGTTAAGGCTCTTAATCACTGAGTCAGTCTGTCCTTGATATTGTGATGGGGTATGCAGATTGGCCACCCTTGACTCTCTGTAGGAATGACACAGTCCACCTGGAGCAACAGAGCTGGGGTCAAAGTCTAACACACAGAACAGTTtcaacatattcaaaaactggAGATACTGCACTTGTTCTGGACTGCTTTtgttcacaacaacaacaaatctgcCATAGTTGTCCAGTGAGTTCCCACCACAAGTTAACAAATTCTTTAGTTTGTCTCCCTGGTTTGCTTCTTTCTTTATCActtcttttgagagacaccaCTGCTCCAGTTGACCTGTATGAATAGTACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125260 lncRNA upstream 56608 3865706 ~ 3924299 (+) True G92894
TU125257 lncRNA upstream 91766 3876213 ~ 3889141 (+) True G92893
TU125255 lncRNA upstream 103535 3827312 ~ 3877372 (+) True G92892
TU125231 lncRNA upstream 173453 3789487 ~ 3807454 (+) False frem1b
TU125249 lncRNA upstream 197222 3782061 ~ 3783685 (+) True G92887
TU125636 lncRNA downstream 76583 4102854 ~ 4103868 (+) True G93128
TU125670 lncRNA downstream 142050 4168321 ~ 4168724 (+) False G93151
TU125671 lncRNA downstream 142050 4168321 ~ 4197972 (+) True G93151
TU125668 lncRNA downstream 148331 4174602 ~ 4217826 (+) False G93150
TU125667 lncRNA downstream 152844 4179115 ~ 4187462 (+) True G93149
XM_039811967.1 mRNA upstream 126097 3826863 ~ 3854810 (+) True LOC120565880
XM_039811503.1 mRNA upstream 157125 3714919 ~ 3823782 (+) True frem1b
XM_039812269.1 mRNA upstream 347542 3630184 ~ 3633365 (+) True LOC120566051
XM_039811203.1 mRNA downstream 105592 4131863 ~ 4132573 (+) True LOC120565394
XM_039811205.1 mRNA downstream 115307 4141578 ~ 4142106 (+) True LOC120565396
XM_039811213.1 mRNA downstream 120222 4146493 ~ 4151003 (+) True LOC120565404
XM_039811210.1 mRNA downstream 134638 4160909 ~ 4161442 (+) True LOC120565402
XM_039811193.1 mRNA downstream 258484 4284755 ~ 4294092 (+) False LOC120565391
TU125177 other upstream 374082 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 387523 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 402927 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 490547 3485779 ~ 3490360 (+) True G92838
TU125102 other upstream 614178 3351767 ~ 3366729 (+) True G92826
TU125669 other downstream 170553 4196824 ~ 4217826 (+) True G93150
TU125644 other downstream 258631 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other downstream 264070 4290341 ~ 4293890 (+) False LOC120565391
TU125908 other downstream 685290 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 2009098 6035369 ~ 6040119 (+) False G93613

Expression Profile