RNA id: TU125320


Basic Information

Item Value
RNA id TU125320
length 719
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G92940
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3043696 ~ 3219282 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGTCTCGCCTGAAGGGCCGCGATGCATTCAAGTCCCCTGGGAAGAACCTGTAACAGTGTCAGGAACACTGGACTTTGTGCGTTTTATTGtccgacacaaacacaaaaggaaCAAAACTTtcgtgtctgtctctgtgtgtgtgtgtgtgtgtttctgtctgtctgtgtgtcagtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtctgtgtgtgcgtctcagtctgtgtgtgtctgtctgtgtgtgtgcgtctcagtctgtgtgtgtgtgtttctgtctgtgtgtgtttctgtctctgtgtgtatgtgtgtctgtctgtgtgtctgtgtgtgtgtctctgtgtgtgtctgtctgtgtgtgtctctgcctgtctgtgtatgtgtgtgtgtctcttagtctgtgtgtgtgtgtgtttgtgtgtctcttagtctgtgtgtgtgtgtttgtgtgtctcttagtctgtgtgtgtgtgtttgtgtgtctcttagtctgtgtgtgtgtttgtgtgtctctgtgtgcgtgcatgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgtgtctgtgtctctgtgtgtgtgtctctctgtctctctgtgtctgtgtctctgtgtgtgtgtctgtgtgtctctgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125348 lncRNA downstream 2906 3014365 ~ 3125394 (-) False G92956
TU125373 lncRNA downstream 30885 3087570 ~ 3097415 (-) False G92965
TU125374 lncRNA downstream 33693 3087570 ~ 3094607 (-) True G92965
TU125361 lncRNA downstream 40832 3056228 ~ 3087468 (-) False G92956
TU125366 lncRNA downstream 45877 3030415 ~ 3082423 (-) True G92959
TU125388 lncRNA upstream 1338 3164208 ~ 3164706 (-) True G92976
TU125403 lncRNA upstream 89320 3252190 ~ 3252920 (-) True G92989
TU125424 lncRNA upstream 175405 3338275 ~ 3338817 (-) False G92994
TU125425 lncRNA upstream 175405 3338275 ~ 3338984 (-) True G92994
TU125409 lncRNA upstream 184660 3347530 ~ 3464035 (-) True G92990
XM_039811241.1 mRNA downstream 139120 2965992 ~ 2989180 (-) False LOC120565433
XM_039811221.1 mRNA downstream 174978 2898548 ~ 2953322 (-) False LOC120565420
XM_039811223.1 mRNA downstream 175046 2933126 ~ 2953254 (-) False LOC120565420
XM_039811222.1 mRNA downstream 175046 2933126 ~ 2953254 (-) True LOC120565420
XM_039811495.1 mRNA downstream 230226 2894783 ~ 2898074 (-) True LOC120565592
XM_039811256.1 mRNA upstream 35463 3198333 ~ 3219207 (-) False LOC120565453
XM_039811255.1 mRNA upstream 35463 3198333 ~ 3219207 (-) False LOC120565453
XM_039811253.1 mRNA upstream 35463 3198333 ~ 3219207 (-) False LOC120565453
XM_039811252.1 mRNA upstream 35463 3198333 ~ 3219207 (-) True LOC120565453
XM_039811254.1 mRNA upstream 35463 3198333 ~ 3217803 (-) False LOC120565453
XR_005640241.1 other downstream 139120 2965992 ~ 2989180 (-) True LOC120565433
XR_005640242.1 other downstream 143491 2965992 ~ 2984809 (-) False LOC120565433
TU125302 other downstream 229621 2895929 ~ 2898679 (-) True G92930
TU124735 other downstream 758634 2368961 ~ 2369666 (-) False G92565
TU124730 other downstream 759453 2366605 ~ 2368847 (-) True G92565
TU125406 other upstream 185282 3348152 ~ 3353929 (-) False G92990
TU125405 other upstream 190297 3353167 ~ 3399599 (-) False G92990
TU125410 other upstream 190297 3353167 ~ 3464035 (-) False G92990
TU125412 other upstream 190297 3353167 ~ 3464035 (-) False G92990
TU125462 other upstream 320747 3483617 ~ 3484774 (-) True G93024

Expression Profile