RNA id: XM_039811196.1


Basic Information

Item Value
RNA id XM_039811196.1
length 1444
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120565391
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4284755 ~ 4313515 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCATATTCATTTATGGGAGGAGGCAAGGCGGGGTCGGTCACTCATTCATGTGCGCTCAATTTCACGTTGATTGTGATGTATAAAGGAAAGGTGCGCAGGAGCTGGCGTACGACCGGTtttatacatgtgaatatttctgtgcgtaggtacttttcaagttttggctgtacgccatcttctggtatgaaagctgcgcagtgttttatacatgaggccccagcTGATTTTCCCTCATAAATGTGACGTCATCCCTGTTTGCGCATGCGCGTGTCACACCTTAAACCGAAAGCGGAGTTGTCCTTTCAGCCGCAGCGATATGGACGGTATGTTTGTGGAGGAAAAGACTTCGTCGGTTACCGGACAGAAAGCGGACTTTCCTTCCCAGATGTGGAACGTGTTCCGTCTCTGCTCCAGCTGCCGGTTTGAGACGTTTCCGAGTTTTCCGAGACTTCGGCCCCGGAAGTCagagaaactcccttttaacATCGAGTTTTGGGAAGCTGTCTGCGTGCTTTCTGTCTGAAACATGGTTCTTTTTGAATGGACTTTGGCGAGTCTAGCCTATAGGACTACGAGCTGCTGTTTGATATGGCGGTGTCTGACCAACGATTAATGTCATGGACTCATGTGTTGACAGACAGCGGATATTTGGGAATCCTAGGATAGTGAAGGAATGCACCGCCTATTGCCTACTATGCCTCTTGcgatcttgcgcatgcgcatgGCAGAATTTATCGCGCACCCACCATAGGCGCCGCGCACCTTCCATATCAGTCTGCATTTgcaaggaggagagagagctgGACCACAACAAGGATGGACTGCTTCAGATCAGATGGTCCAGCTGCACAGAGAGCCTCAGTGCTCTATGACTACAACAATGATGATGGGAATCTGTGGACCAGGACCAGTCAGGacgcccccctccccctctgttcctcctcccatcctcctgACTCCAGCTGCCTGGTCTGTCTCAACCAGACGGTCTTCGTGGTGTGCCGTAACCTAACCAAAGGGGTCAAAGTGATGATGGAGGCTGGAACAGACCAGGTCCTCCTCTCAAAGTCTGaatgccCTGAGCCTCCCTCTGTCGacgctccacaatCTCAGCTGGCCGTTATCATCCCCTCcatcctcctcatcctcatcatcatcatcgggGGGGTTTTCTGTAGGAAACGCTGCAGGAAGAGAAGAAATAAaccacagactcacacagaagAAGAATCATCCACCATGACTAATGAAGACCCCATGAAGCAAACTGAGATCTTTTCTACTTTTAAAGATGGACTGCTACAGTTCAGATGACATAAATGCAATGAAGGCCACCCTGGTCTTTGATGACAACAATGATGATGGGAATCTGTGGACCAGGACCAGCCAGGacgcccccctccccctctgttcctcctcccatcctcctgACTCCAGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125691 lncRNA upstream 1469 4282869 ~ 4283295 (+) True G93169
TU125686 lncRNA upstream 19399 4235824 ~ 4265365 (+) False LOC120565405
XR_005640231.1 lncRNA upstream 44427 4235808 ~ 4240337 (+) True LOC120565405
TU125668 lncRNA upstream 66938 4174602 ~ 4217826 (+) False G93150
XR_005640233.1 lncRNA downstream 27831 4332961 ~ 4340598 (+) True LOC120565406
XR_005640232.1 lncRNA downstream 28181 4333311 ~ 4340598 (+) False LOC120565406
TU125717 lncRNA downstream 49612 4354742 ~ 4376530 (+) True G93191
TU125836 lncRNA downstream 108131 4413261 ~ 4413921 (+) True G93281
TU125861 lncRNA downstream 155141 4460271 ~ 4465434 (+) True G93294
XM_039811210.1 mRNA upstream 123322 4160909 ~ 4161442 (+) True LOC120565402
XM_039811213.1 mRNA upstream 133761 4146493 ~ 4151003 (+) True LOC120565404
XM_039811205.1 mRNA upstream 142658 4141578 ~ 4142106 (+) True LOC120565396
XM_039811203.1 mRNA upstream 152191 4131863 ~ 4132573 (+) True LOC120565394
XM_039811967.1 mRNA upstream 429954 3826863 ~ 3854810 (+) True LOC120565880
XM_039811201.1 mRNA downstream 39529 4344659 ~ 4345129 (+) True LOC120565392
XM_039811207.1 mRNA downstream 60992 4366122 ~ 4366561 (+) True LOC120565398
XM_039810251.1 mRNA downstream 68696 4373826 ~ 4374754 (+) True LOC120564977
XM_039810180.1 mRNA downstream 103513 4408643 ~ 4419781 (+) True prpf38a
XM_039811596.1 mRNA downstream 134210 4439340 ~ 4443524 (+) False LOC120565669
TU125669 other upstream 66938 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 677939 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 691380 3592105 ~ 3593384 (+) False LOC120565459
TU125164 other upstream 706784 3557997 ~ 3577980 (+) False LOC120565459
TU125125 other upstream 794404 3485779 ~ 3490360 (+) True G92838
TU125908 other downstream 406431 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1730239 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1896955 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 2049767 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 3044680 7349810 ~ 7350587 (+) True G93938

Expression Profile