RNA id: XM_039811197.1


Basic Information

Item Value
RNA id XM_039811197.1
length 980
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC120565391
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4284755 ~ 4313515 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATATAGGAAGCAGCCTCTACCTCCAGCTCATCCCTAGACAGCATACAGGACAGCAACATAGAGTAGGCTACACAGTAATAAGAATGAATGGTAGGCTAATATTATAGACAGATTATGATTAAGATTATACAGTCAGAACTACATTGAGTATTTTGGATATTCAGTGATTTTGATGGGAACATATATAGGCTTCCACTCTGAAACTTGAAATAGGCTGCAGGAATCCCATCAGGACAGCATGGGCATGCATGTCCATCTTTCTACCCCGCCCTCTTGAAATATTTCACTGTATGTCACTGTGACGTTACCTGGGCTATAAATGCCCCCATATCTGGGTTTTCACTGTGTTTCTGGTTTTGCCCTCTTACCAACAACACGTAAAGCTGAACATCCATGATGGACTGCTACAGTTCAGATGACATAAATGCAATGAAGGCCACCCTGGTCTTTGATGACAACAATGATGATGGGAATCTGTGGACCAGGACCAGCCAGGacgcccccctccccctctgttcctcctcccatcctcctgACTCCAGCTGCCTGGTCTGTACCAACCAGACGGTCTTCGTGGTGTGCCGTAACCTAACCAAAGGGGTCAAAGTGATGATGGAGGCTGGAACAGACCAGGTCCTCCTCTCAAAGTCTGaatgccCTGACCCTCCCTCTGACGAATGCCCAGAATGCCCTGACCCTCCCTCTGTCGacgctccacaatCACTGCTGGCCGTTATCATCCCCttcatcctcctcatcctcatcatcgGGGGGGTTTTCTGTAGGAAACGCTGCAGGAAGAGAAGAAATAAACCACAGACTCACACAAAAGAAGAATCATCCACCATGACTGGTATGGCACCATGAAGGAAACTGAGATCTACCGACatttttaactttaactttcatttttaaagttttaacCTGCACTGACTAAATCTTATGTACTGTAATAAAAGTGGATAAAAAGATCTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125694 lncRNA upstream 2339 4281451 ~ 4299758 (+) True G93170
TU125691 lncRNA upstream 18802 4282869 ~ 4283295 (+) True G93169
TU125686 lncRNA upstream 36732 4235824 ~ 4265365 (+) False LOC120565405
XR_005640231.1 lncRNA upstream 61760 4235808 ~ 4240337 (+) True LOC120565405
TU125668 lncRNA upstream 84271 4174602 ~ 4217826 (+) False G93150
XR_005640233.1 lncRNA downstream 19446 4332961 ~ 4340598 (+) True LOC120565406
XR_005640232.1 lncRNA downstream 19796 4333311 ~ 4340598 (+) False LOC120565406
TU125717 lncRNA downstream 41227 4354742 ~ 4376530 (+) True G93191
TU125836 lncRNA downstream 99746 4413261 ~ 4413921 (+) True G93281
TU125861 lncRNA downstream 146756 4460271 ~ 4465434 (+) True G93294
XM_039811193.1 mRNA upstream 8005 4284755 ~ 4294092 (+) False LOC120565391
XM_039811210.1 mRNA upstream 140655 4160909 ~ 4161442 (+) True LOC120565402
XM_039811213.1 mRNA upstream 151094 4146493 ~ 4151003 (+) True LOC120565404
XM_039811205.1 mRNA upstream 159991 4141578 ~ 4142106 (+) True LOC120565396
XM_039811203.1 mRNA upstream 169524 4131863 ~ 4132573 (+) True LOC120565394
XM_039811201.1 mRNA downstream 31144 4344659 ~ 4345129 (+) True LOC120565392
XM_039811207.1 mRNA downstream 52607 4366122 ~ 4366561 (+) True LOC120565398
XM_039810251.1 mRNA downstream 60311 4373826 ~ 4374754 (+) True LOC120564977
XM_039810180.1 mRNA downstream 95128 4408643 ~ 4419781 (+) True prpf38a
XM_039811596.1 mRNA downstream 125825 4439340 ~ 4443524 (+) False LOC120565669
TU125644 other upstream 4687 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 8207 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 84271 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 695272 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 708713 3592105 ~ 3593384 (+) False LOC120565459
TU125908 other downstream 398046 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1721854 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1888570 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 2041382 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 3036295 7349810 ~ 7350587 (+) True G93938

Expression Profile