RNA id: XM_039811513.1


Basic Information

Item Value
RNA id XM_039811513.1
length 2214
RNA type mRNA
GC content 0.56
exon number 14
gene id trmt1l
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4685224 ~ 4713233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGATGCCGGAGAGTCACCGCCAGCCGGCGACCGAGCTGCCGAACAGCCGGTGAAGACTGAAGCTGCTGCAGACGGCGACGCCAAGCCTTCAACCACAACCACCGagagacacatctCCATCCAAACTAAACTGGAAGGCCTCGAGGGGCTGGTGGACCTGAATGGTGCGGGACGTAAGTCGTGTCCTCTGTGTCCCgaggagaagtttaaagcctgCTACAGCCACAAGCTCCGCAGACACCTGCAGAACCTCCACTGGAAAGTCTACGTGGAGTTCGAAGGCCAGAGGATGTGCATCTGCCACCTGCCCTGCAGAAACCTGAAGCCCAGCTCCAGTGGAGATCAGGCCTCGGGGAGACACGTGGCCCACTACCACTGCGTGGTGTGCTCTGTCACCATCGCCCGTAAGACGGACATGGTCAGCCACCTGAAGCGACACGTCAACAAAGGAGAGACCGAGGCCAGCTACTCCGGGAGCTCAGACGTGCCGTTTGACGAGCCGGCTCCGTCTGGCCAGGCGTATGAAATCATGAAGGAACTGGGAACCAACGTTCAGCTCCTCCCGAACCACACCACGCCGCAGAAGAGCGACACCTACTTCAACCGCAAGATGAAGACCAACAGgcagCTGGTGTTCTGTTCGCTGGCGGTTCTGGCGGAGGAGAGGAACCCGATCGAGTGTCTGGATGCTTTCGGAGCCACAGGGATTATGGGCCTCCAGTGGGCGAAGCACCTTCGTAACGCCGTCAAAGTGACCATAACCGATATCAGCGACACGTGCGTGAAAATGATCAAAGAGAACTGCGAGCTCAACAACATCCGGGTGGACGGCGGCTCACGAGGCCCCCGGGGGCCCGACGGGGCGACCAGCGAAGTGGAGGGATCGCCCATCGCTACGGTGGAGGTCGCCAAGATGGACGCCAACGTCACCATGCACCTGTGGCCCTTTGACTACATTCACTTGGATCCGTTCGGGACGGCCGTGAACTACCTGGACGCTGCCTTCAGGAACGTGCGTAACCTGGGCATCGTCTCGGTGACGTCCACAGACACGAGCTCTCTGTACTCCAAGTCTCCCAACGTCACGCTGCGTCACTACGGCTGTCACATCGTCCGCACCGAGTACTACAAAGAGCTGGCTGCTCGCATGGTGGTCGCCACCGTGGCCCGGGCGGCGGCTCGCTGTAACAAAGGTATCGAAGTCCTGCTGGCGGTGGCGTTGGAGCATTTCGTCCTGGTGGTGGTGAGAGTTCTCCGAGGTCCCACGCAGGCCGACGAGTCGGCCAAGAAGTTACGGAAACTGCTCCACTGTCAGTGGTGTGAGGAGAGAGTCTTCCTCAGACAGGGAACCATGGTGGACGACTCGCTGCCCTGTAACTGTCATGGAAGTTTGCCTGGAAGGACTGCGGTGCAGCTGGGGCCGTTATGgtgtggtCCTCTGTTTAATATCGTccttgagggggggggggtgACAACACAAGTTTGTAAAAGATGGAGTCACTGCTGGGTTCCCTCTCAGTTTAGTTTTTCCTGTCCAGCTCTAATGTTCGGTCTCTCTCCAGCGAAGAGGAAGTCGGGAGACGAGTCGGGGAACGTAGTGAAGAAGATGAAGTCCGATGCGTCTCTGGATCACCCGCCCTTCTACTACAGCATCCACCGCCACAGCATCAGAGGCATGAACATGCCCAAGTTGAACAAGTTTCTTCAGTACCTGACGGAGGCCGGCTTCAGGGTGAGTCGGACTCACTTCGACCCGACGGGCGTTCGAACCGACGCCACGCTGGAGCAGTTTAAGTCTGTCCTCACCAAGTACAGCGTCCCCACGTACACCAACGCCAACGCCGCGCAGAGCAGCGCGAGCGCCGAGACGACCCAGTGAGAGAAACGAGAGCAGAAAATCATTCACACGAAATCATCCGCTCATCTGGTTTCTACTGTTTCTGTGTCACCTGAACAAAGTTCTGACTGCACTGATGTCTGATGCTTTAACTAGAACTAAGTAGAAACTCTTTAATCAAACCAAAACTGGTGAGGATTGCCTTTTGCTAAAACCGCACACCAAACTGATCCTGCAGCACGGATGATGTttctctatttatttcagatttctctttttatttcattacttgctgatttattgtctttttttctgtttgctcATCCTGTCTTctaaaaacatattaaaaatcGGTCTGCGAAGCCTGAATATCTCA

Function

GO:

id name namespace
GO:0030488 tRNA methylation biological_process
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125881 lncRNA upstream 78431 4592376 ~ 4606793 (+) True G93308
TU125841 lncRNA upstream 179250 4500549 ~ 4505974 (+) True G93286
TU125842 lncRNA upstream 179250 4500549 ~ 4505974 (+) False G93286
TU125852 lncRNA upstream 183172 4496053 ~ 4502052 (+) True G93288
TU125859 lncRNA upstream 217913 4461129 ~ 4467311 (+) True G93293
TU125901 lncRNA downstream 14435 4727668 ~ 4759060 (+) True G93323
TU125906 lncRNA downstream 14435 4727668 ~ 4728180 (+) False G93323
TU125916 lncRNA downstream 32047 4745280 ~ 4750169 (+) True G93332
TU125920 lncRNA downstream 85178 4798411 ~ 4805232 (+) True G93335
TU125930 lncRNA downstream 180085 4893318 ~ 4893706 (+) True G93345
XM_039811615.1 mRNA upstream 23039 4657761 ~ 4662185 (+) True LOC120565686
XM_039811612.1 mRNA upstream 23787 4657761 ~ 4661437 (+) False LOC120565686
XM_039811614.1 mRNA upstream 23787 4657761 ~ 4661437 (+) False LOC120565686
XM_039811606.1 mRNA upstream 82071 4599472 ~ 4603153 (+) True LOC120565681
XM_039811598.1 mRNA upstream 165631 4515052 ~ 4519593 (+) False LOC120565674
XM_039812507.1 mRNA downstream 1422 4714655 ~ 4784151 (+) True niban1a
XM_039812521.1 mRNA downstream 139715 4852948 ~ 4873356 (+) True mettl11b
XM_039812508.1 mRNA downstream 221528 4934761 ~ 4946307 (+) True gorab
XM_039812509.1 mRNA downstream 253326 4966559 ~ 5000440 (+) True prrx1b
XM_039812511.1 mRNA downstream 253326 4966559 ~ 5000440 (+) False prrx1b
TU125644 other upstream 387814 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 391334 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 467398 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1078399 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 1091840 3592105 ~ 3593384 (+) False LOC120565459
TU126315 other downstream 1322136 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1488852 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1641664 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2636577 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 3185439 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile