RNA id: TU125933


Basic Information

Item Value
RNA id TU125933
length 479
lncRNA type read_through
GC content 0.48
exon number 2
gene id G93348
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4934071 ~ 4993591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataaacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacactgcTCTTTCTGTTATTGTTTCATTTCCTCCTCTTCTACCTGCACATACCTCTGACCGTCTCTTCTGATCCACCTAGACTCAAACTGCCAGCACACCGCCGTTTAATGTgtgttattctatatttttcttattctcTTCAAATCCCATCTTCAGACCCAAACCAACAATGCGTTAGTCCACCTCTCAATACtgtctgacttcctgtctgcgTCTCACAGCTCCACGTTTCACCAGCAGCTTCCCAAAACAGCAGGTCACCGTCAAACAATCAGGAGCAAAGCGAGCATTTGtcggggactattttcagcggcgTATTgatccacatttggtgctccaGTGAGCGTTTGCAGCAgcagggcgtgtgtgtgtgtgtgtgtgtgggattgagGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125930 lncRNA upstream 40365 4893318 ~ 4893706 (+) True G93345
TU125920 lncRNA upstream 128839 4798411 ~ 4805232 (+) True G93335
TU125910 lncRNA upstream 148127 4711274 ~ 4785944 (+) True G93327
TU126066 lncRNA downstream 65015 5058606 ~ 5100316 (+) True G93431
TU126067 lncRNA downstream 68736 5062327 ~ 5100734 (+) True G93432
TU126108 lncRNA downstream 334394 5327985 ~ 5328233 (+) True G93448
TU126099 lncRNA downstream 359753 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 406540 5400131 ~ 5411358 (+) True G93441
XM_039812521.1 mRNA upstream 60715 4852948 ~ 4873356 (+) True mettl11b
XM_039812507.1 mRNA upstream 149920 4714655 ~ 4784151 (+) True niban1a
XM_039811513.1 mRNA upstream 220838 4685224 ~ 4713233 (+) True trmt1l
XM_039811612.1 mRNA upstream 272634 4657761 ~ 4661437 (+) False LOC120565686
XM_039812496.1 mRNA downstream 30919 5024510 ~ 5201873 (+) False LOC120566192
XM_039812497.1 mRNA downstream 43400 5036991 ~ 5201873 (+) False LOC120566192
XM_039812495.1 mRNA downstream 43798 5037389 ~ 5201873 (+) False LOC120566192
XM_039812491.1 mRNA downstream 132907 5126498 ~ 5201875 (+) False LOC120566192
XM_039812488.1 mRNA downstream 132907 5126498 ~ 5201874 (+) True LOC120566192
TU125908 other upstream 220886 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 636661 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 640181 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 716245 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1327246 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 1041778 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1208494 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1361306 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2356219 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2905081 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile