RNA id: TU126108


Basic Information

Item Value
RNA id TU126108
length 229
lncRNA type intronic
GC content 0.33
exon number 2
gene id G93448
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5327985 ~ 5328233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctaaaatcaaggcattgcaattgtataaattaatattaaagtttaattaaaaaaatatctagcagaaatatggctacaatctgatagtcacatacagtatacagtagcctaagaacagaatagcttacctattgttattattattattatttattgaggcactttcttgcaggatttcactgaacatatcagacaacgagggtgcatgcccctcatctggtgcagcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126067 lncRNA upstream 227251 5062327 ~ 5100734 (+) True G93432
TU126066 lncRNA upstream 227669 5058606 ~ 5100316 (+) True G93431
TU125933 lncRNA upstream 334394 4934071 ~ 4993591 (+) True G93348
TU125935 lncRNA upstream 384038 4943645 ~ 4943947 (+) True G93350
TU125937 lncRNA upstream 384038 4943645 ~ 4943947 (+) False G93350
TU126099 lncRNA downstream 25111 5353344 ~ 5407242 (+) True G93439
TU126101 lncRNA downstream 71898 5400131 ~ 5411358 (+) True G93441
TU126122 lncRNA downstream 72584 5400817 ~ 5406747 (+) True G93462
TU126089 lncRNA downstream 160061 5488294 ~ 5492457 (+) True G93437
TU126234 lncRNA downstream 268537 5596770 ~ 5660805 (+) True G93541
XM_039812491.1 mRNA upstream 126110 5126498 ~ 5201875 (+) False LOC120566192
XM_039812488.1 mRNA upstream 126111 5126498 ~ 5201874 (+) True LOC120566192
XM_039812493.1 mRNA upstream 126111 5126498 ~ 5201874 (+) False LOC120566192
XM_039812490.1 mRNA upstream 126111 5126498 ~ 5201874 (+) False LOC120566192
XM_039812489.1 mRNA upstream 126111 5126498 ~ 5201874 (+) False LOC120566192
XM_039812505.1 mRNA downstream 1607 5329840 ~ 5486885 (+) False mast2
XM_039812503.1 mRNA downstream 13933 5342166 ~ 5486885 (+) False mast2
XM_039812502.1 mRNA downstream 50118 5378351 ~ 5486885 (+) False mast2
XM_039812506.1 mRNA downstream 50119 5378352 ~ 5486885 (+) False mast2
XM_039812504.1 mRNA downstream 56693 5384926 ~ 5486885 (+) False mast2
TU125908 other upstream 614800 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1030575 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1034095 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1110159 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1721160 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 707136 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 873852 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1026664 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2021577 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2570439 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile