RNA id: TU126234


Basic Information

Item Value
RNA id TU126234
length 5114
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G93541
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5596770 ~ 5660805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGAATGTTTGTATTTGgacaaaatattttctttattttgcaaGAGAACTGAATATGGTGGAGCTCCACTGATAAACGTACATGAGTTCAGCTCATAAACAAATGGAGAATCTACAACCAACAAACTATTGCAAACCGATACAAGAAAGTAAAGTGAACTGTGATTGGCCAAAACCATTTCAAAGATAGAATACCAAGAGAAGGCGGCAGCAGGTATGGCAGAGGGTAATACTGAGAAAGGGGCCAATGACATTTGTACGAGAGGAAATGATCAACACACTCTCTCTGAATTAGGTCTTTTGAATTTTGAAGACTTTGGGTTGAACACGGTTGTGCCGTTGGCCAATAGCAAACTATCTTGACACTTGACCTTTGAGGTGGTGATCATACCTAAAAGTCAAAAAGTATTATTTTTTGCTGATCAGTGTGGTCGAGGTCTTCTGCAATGTTTAccacattgttaaaaaaaacctgtgcTCACATTGTTGCAATAAGACATTCGCCCATTGTTCTTAAACATTTACGTATTAATCTGATGTGCCAACAGTAGACATACATTTCCATAAGGTAAAGGTCCTCTCTCTCAGTATTACGTTGTAATAGCATTAGGCAACTTACACAAAAAGAACTGGAACTTGTTTCAGCTGTAAGCAGTGATGTTACATTTGCTATATCAAATTCAGATCGGAATACACCATAAACAGACAAataacagttgtttttttaaagacatattttttaccatttttcttttatacacaaaaaacaacagtcAAGAGTACCAAATGCATGCTGGATCTGTACGTATGTCAAAAATGGGTAAAAGGGGGAAGGGAAGGGTGGGTGTCATATACACattttttagttagttttttaaaagttctttatatatatatttatatatatataagaagcTGTTACTCCTCAAAGCTGTGCTGGGTACTGTGATCAGATAAGCAGTGATAAGAACACAACTCCTCGCTGAGAATCACAAAGATATTCAAACCTGGCTGCAAATAAAACTTTGCAGAAATGCTTGAGGGCAAGTAGCAGTATTTGTAGTAATAATGGTAGTAGAACAACAGACAGTTTCTATTTTAACAGTCCTGGGGTAGTAGTGAGTATAAAAACAAAAGGTAACAGTAGTACCTTTATTGTTACAGAGACTGCACCTTTGTTTGAATCAAAATGTACCTTTTATTTTCTGAGAGGTGAACCTAAGCCTGTTTCCTGGAGTTATTTGAGTTAGAGCTGAGTTTTCAAAAGTGAAAACTCAACTAAACAGTCTGTAAAAGTAAACTTGACAAAACAGATATTTTGGTTTGTCCCTATAACTCTCCTAAACTGCTTTTCTTTCTGCCTGTTCTAAGTACTATTACGAACGAAACCCTGCCCATTCAGAAACCCCTTTCCTGTGGGGGCCGATGCACCTGAGGGAAAACATGCGCCCCTCCATCACGAACCCCTGGCTGACAGAAAAGGGAATATTGCATGTTGTCGTGGAGTGAGACACAAAGGGAAATCATCCTGCAGAAATCTCAGGACTCTAAGTGCTGACATTATATCaagggtgtaaaaaaaaaaaagacaaccacTTAACAGATTAAAAATATTACCTTAACACTTTTGGCCCCGTTGACCTTCCGTATCTCTTGCAGcaagctgctgttgtctgatTGGGTTGGTTTCCCTCTAGGATACATATCAATCTTTTGCATTTGATTATGGAACTTCTTTTAGAAGTATATATAATCAAACATATTGACTCAAATTAAATCATAGACAGGGTGAGTTTCTTTTTAAACAcaccaaatacagaaataagCTAAATCTAATCCCATCGGTTTCAAATTAAACTGTAAAAAATGTACGGAGCcccaaaagtaaaaaacaaaaaaacaagatccAAATCTTGCGTctaattattataaattatttataAGTTTGTTTTTTGAGATTTCTGCAGGACATTTTCAACACAGAAATAGAAAAGTTTCAAATTGCAAACCAAACTTAACTCCAGCTACGGTCATCATGTGCAAATATATGTAATAGCATATATGTAAGTAGCATGAGTGAGAAAGCTGTGACTTTTGGTAATTGCCTTTTAAATCCTCAACAGAAGTCAGTTTATACcaacggcacacacacactagagagTGCAGATCAAGTTAAATCTGATTGATTTTTACATTGGGACATCATTGAACAAAGATTTTAAAGATGGATCCTTCCTGACATGTCACAAAAGTACCTGTTTAAACTCTTTTAACAGAAATGAACAACCAACAATCCTAGCTAGCTGTACGGGACACTCATTCAAACAACATGGTTTTATCTTCTGAGTTGTGATCATATCAAGGCAATggagataaaaaaacaattaaaaaaaaaaaaacagtgaaacatcCATTTCCAATAATAATCAACAGAAGGATTAACAAGAACTGAAATCTTTGGTCTTAATGTTTTAGGggaaaatgaaaaacagtcAAAGAACAGCGACTACGACTCAAAACAACCCTTCAAACGGCAATATCTTTCAGCTTTATGATAGATATGACATCTCTCCGTGTAAATGTGACTCATGATGCATACGCAGACATCACAGGTTAATATTAACACAAGTCTCTTGTAGATGATAATGTGTGCAATTTCAGACAAGCCCTCTGTGAAGGAAAAGATCTGAACATATCTCTGAGAAGTTTCAAAAAGCGCCTCCGTCCCTCCTAAAGTAGCTCTACGTTTGCATGTAACGAATACTGTACATCTGTCATAAAACTCTAAAAACCTTGGCCCTGCTCACCATTAAACAAAAGGAAACTCTTCGGGGTTTTTTTTGTACgttttctttaataaatgtatattttcataTAAAGACATTCAACAGTGAGCAATGCAATATAGTTCAAGTaataaagttgttgtttttgagTTCCCCGTTTCGAAAAGCAAGTCagctaataataaaaaaaaaaaaaaacagaaataaaacctTCCGacagtggtggtggtgatggaggGAAAGACTATGACATCCTTTTGGTGACGATGCTGTGTCTAAGCTACGGGAAGCCATGAGGGACAAGCCTCTTGAAGTGAGGACACTACAAAAGTCAAAGTCGTGGGGATCTAGCTTAACTGACTGATTGTGATTTAGGtatcaatgcagaaaaaaaaaccctgatttatttttatttatttatttttttccgctGGCTTTGTTGTGTGGTCGTTTCTATGGTGAACTAAAAACTCCTGAGGGTTAATGACCGGAAACGTTGTGAAGGAGACGTTAGTCGGCCAAAATCGTACGGGCCTGCATTTCCGATAGCACCTTGAGAGTTAGGATTATCTTGTTTCCTTTACGGACGAACGTGATGTGCGGTGCTTAAAaaagaattaataaaaaatagaagaaaggaaaaaaaccaaaaaaaaaactaacaaaaaacaGCTTTGGACCCGGACTGAtcctttttttacattcaagatTATATCAACAAACCCTGCCTTGCTGTCCCGCGTCCaaaagagagagcaaaagacagTCGTCACAGGTGGACAGCGACAGATACAAAACGCAAAATGGCTGTGTCCCAATTCAGAGGCAGAGGACTTTAAAGAACGCCGGTTACGgaaggaaaaagcaaaaacgtgGACCTCCTCCGCAAAGACTATTAACCACAGTGTCATCGCTAATCAACCAATACTAATGCCTGTAACCGCAGCGACTGAAACGTCACGTTAATATTTGTAGCCACAGTTTGGACGGCTGTTGGAGGCCTAAAACAATACAGAAGGTACAGGATAAGCAAAAGGAGAAGCTTCTGACAGCAACAAAGCAAAGTCCAAaatcttttttctaaaaaaacaaacaaaaaaaagacaaaagaaagtcCCCATTTCTCAGCTGAAATCGAAAGTGGCCCCTGAAATAGGACACAGCCGACATCTCACCGCATCTTATATGCCGCAGCCGTTGCGTCCAGCTGTGCCGGCACCGTCTTTCGTCCTCCACACCTGCTTTTAGCTTCAGCTGGGACGGTCGAGAGGGGACCACCGGGGGCCAGCAGTACGCTTCAAGCTAAATCTAATTTGGCCTGTCCTCGCAGGCAAAACTGTCCATTTCTGCAGTTGATGCTCTGCCAAAGACGTCGTTGCAAGCTGTATTAACACTTTTGcttttttacatatttaactttgtttctgttttgtatttagGAACTTGCAAGCCACGGCCGCTCCAAAcctctactctactctactctactctactctgcGTGGATGCCGTTAGACAACAGATCTGGAAGTCCCAGCGAGTACTGTACGTTCCCATCCACCTCTCTTTGTGCATTTTGAACTGGCGCGTAAATAGACCAAAGTGTATATGGCATCAATTTGAAAAGATATCaccaaaatctttttttatacatgaCGGGAATGTGTCTATTGGCGTTATTTAAACCCTGTCTTTATCAATATGCCAACAgattattttatctgtttttcaaAGACTGAGGTTGCCAGTTTTGAGTCTCTACATGCACAAAAATGTAGGataacagaaagaaagaaagcagtaATGAAATGTCACCGGTCTTACTGGTGCCCCTTTAATTACATGATCCGGTTATGCCTTCTCGTGAATATTTGTCTAATACTtcagtcacgttttcatcaatTTACTGAAGTAGTTTTACATGAGTTTGAGGCGACTGGACAGCAGTCTGAAAACAGGCCAAATTGGATTAGGTACTGCCGGCTTTAGGACACCCGAACCGATTCAGTCtccagttaaaaaataaaaacaaaatggcttTTGGGTCCACAAACCTCGcctggagggtgtgtgtgtggggggggtaaATAACGGTGATACCGTCGGGGGGTCACTACACTGTCGGGCGGTGAGGAGGACACTGAGACGGGGGTTTAGATAAACACGTGGTGGGTACAACTCAAGTTGTATCATTCACTCACAATGACTCCTCTGGAGCTTCTCAAACAATGGCCCTCTTCCTACAACCTGATACACTCCTTCagacgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagagtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126089 lncRNA upstream 104313 5488294 ~ 5492457 (+) True G93437
TU126101 lncRNA upstream 185412 5400131 ~ 5411358 (+) True G93441
TU126099 lncRNA upstream 189528 5353344 ~ 5407242 (+) True G93439
TU126122 lncRNA upstream 190023 5400817 ~ 5406747 (+) True G93462
TU126108 lncRNA upstream 268537 5327985 ~ 5328233 (+) True G93448
TU126307 lncRNA downstream 304007 5964812 ~ 5965059 (+) True G93609
TU126313 lncRNA downstream 374564 6035369 ~ 6038848 (+) True G93613
TU126314 lncRNA downstream 374564 6035369 ~ 6047722 (+) False G93613
TU126316 lncRNA downstream 374564 6035369 ~ 6051520 (+) False G93613
TU126350 lncRNA downstream 554263 6215068 ~ 6215735 (+) True G93640
XM_039812505.1 mRNA upstream 109885 5329840 ~ 5486885 (+) False mast2
XM_039811550.1 mRNA downstream 342006 6002811 ~ 6029193 (+) True LOC120565642
XM_039811753.1 mRNA downstream 406878 6067683 ~ 6071247 (+) True LOC120565748
XM_039811499.1 mRNA downstream 601415 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 674946 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 694087 6354892 ~ 6381598 (+) True rhpn1
TU125908 other upstream 883585 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1299360 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1302880 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1378944 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 1989945 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 374564 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 541280 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 694092 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1689005 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 2237867 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU158564 False 3042 lncRNA 0.38 3 NC_035909.1 41802403 ~ 41873492 (+)