RNA id: TU126307


Basic Information

Item Value
RNA id TU126307
length 248
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G93609
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 5964812 ~ 5965059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAAAAGGGGAACTTGAGTCGAGGGAATCCAGTGGTGAGTGGTGGGTGCTGTGTGCTCTCCAGAGCGTGCCCCGTGACATGGTTGTGATGACCATGTGGTAGGCCTCCTCCAGAGTCCAACAAACAATTGAGTCCAATCCTTACTGAGATAGAGAGAAGCAGGTGTGAGGagcaagcaggcaggcaggcacacgAACGAGCAAGGCAGGCTGCAACATGAGACAAACAGAAAATCTGTTTTAGCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126234 lncRNA upstream 304007 5596770 ~ 5660805 (+) True G93541
TU126089 lncRNA upstream 472355 5488294 ~ 5492457 (+) True G93437
TU126101 lncRNA upstream 553454 5400131 ~ 5411358 (+) True G93441
TU126099 lncRNA upstream 557570 5353344 ~ 5407242 (+) True G93439
TU126122 lncRNA upstream 558065 5400817 ~ 5406747 (+) True G93462
TU126313 lncRNA downstream 70310 6035369 ~ 6038848 (+) True G93613
TU126314 lncRNA downstream 70310 6035369 ~ 6047722 (+) False G93613
TU126316 lncRNA downstream 70310 6035369 ~ 6051520 (+) False G93613
TU126350 lncRNA downstream 250009 6215068 ~ 6215735 (+) True G93640
TU126357 lncRNA downstream 276136 6241195 ~ 6242158 (+) True G93644
XM_039812505.1 mRNA upstream 477927 5329840 ~ 5486885 (+) False mast2
XM_039811550.1 mRNA downstream 37752 6002811 ~ 6029193 (+) True LOC120565642
XM_039811753.1 mRNA downstream 102624 6067683 ~ 6071247 (+) True LOC120565748
XM_039811499.1 mRNA downstream 297161 6262220 ~ 6290119 (+) True tut4
XM_039811775.1 mRNA downstream 370692 6335751 ~ 6345081 (+) True LOC120565762
XM_039812355.1 mRNA downstream 389833 6354892 ~ 6381598 (+) True rhpn1
TU125908 other upstream 1251627 4711561 ~ 4713185 (+) False trmt1l
TU125644 other upstream 1667402 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 1670922 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 1746986 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 2357987 3600978 ~ 3606825 (+) True G92848
TU126315 other downstream 70310 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 237026 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 389838 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 1384751 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1933613 7898672 ~ 7905247 (+) False LOC120565614

Expression Profile