RNA id: TU126542


Basic Information

Item Value
RNA id TU126542
length 343
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G93790
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 6876151 ~ 6876493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtttttttcgattgctaaacgacagtgggcacaactggagtcacatgtgcaaaactcaaactacagtctgcactacctacagtcacctgagctaaacagttcacatcacctgcaaaactcattcaaagcaacacaactcttaacacacgtctcaaacagtatgcacaggcctcactgagataacacacactgtcactcagaacacactgagggtaaaaacactagcatcaaacaccaatacagaaattacaaactttctcatctttacagtttgaacaatttgagtgacttgacactactcaacagtttatttaaggaaaaaatatagattgtatagcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126505 lncRNA upstream 39333 6836591 ~ 6836818 (+) True G93758
TU126449 lncRNA upstream 286498 6589203 ~ 6589653 (+) True G93713
TU126433 lncRNA upstream 477154 6390156 ~ 6398997 (+) True G93700
TU126357 lncRNA upstream 633993 6241195 ~ 6242158 (+) True G93644
TU126350 lncRNA upstream 660416 6215068 ~ 6215735 (+) True G93640
TU126543 lncRNA downstream 3310 6879803 ~ 6880081 (+) True G93791
TU126583 lncRNA downstream 97814 6974307 ~ 6975368 (+) True G93820
TU126587 lncRNA downstream 99151 6975644 ~ 6977546 (+) True G93823
TU126598 lncRNA downstream 116363 6992856 ~ 6993162 (+) True G93834
TU126619 lncRNA downstream 250821 7127314 ~ 7130558 (+) False G93851
XM_039810252.1 mRNA upstream 152874 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA upstream 152874 6672071 ~ 6723277 (+) False ghrhrb
XM_039811997.1 mRNA upstream 235031 6627642 ~ 6641120 (+) True cyldl
XM_039812355.1 mRNA upstream 494553 6354892 ~ 6381598 (+) True rhpn1
XM_039811775.1 mRNA upstream 531070 6335751 ~ 6345081 (+) True LOC120565762
XM_039811272.1 mRNA downstream 89054 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039811274.1 mRNA downstream 130677 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811275.1 mRNA downstream 231656 7108149 ~ 7127272 (+) True igfbp3
XM_039811515.1 mRNA downstream 387054 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 477355 7353848 ~ 7379344 (+) True LOC120565797
TU126420 other upstream 507797 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 662134 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 836032 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2162966 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2582261 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 473317 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 1022179 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1360877 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1360877 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2270669 9147162 ~ 9159695 (+) True G94199

Expression Profile