RNA id: TU126619


Basic Information

Item Value
RNA id TU126619
length 3245
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G93851
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7127314 ~ 7130751 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCTGTCCATCACAGCTATCTGTCCTGTGCTTAGAGAACCTTTAACCTtccttaaaaagaaaacaacaattaagctgagagagaaggggaagaaagagagaatccTACCATCTGCACTATTCTtttagagagagaggaaggacgGACTTTTCCACTCACTTTAAAGAGGACATGTTTGTGACTGTGACCCAAAAAAAACCCGCACCACCACCGTTtctattatgtgtgtgtgtgtctgtctgtctgtctgtctgtgagtgtgtaaccgcaagtctgtttgtgtgtctttatgtgtgagCACCTGCATAACGTACGTGTGCACAGCTGCATGTCTGTGCAAGATGGCGTGTGAGTGTGCGCTTTCCCAAAAGTGTTTATATGTGTAAATATTGTATGTTACTAAGCTCAGAGATGTCAGACTGCCCATCCCCAGCCCATGCTCCATTAAACaatgcagaaaagaaaaaagaaacgcTCTCTGGCTCAGAGTCCAATTCGAAGTGAAGGATTAAAGGACGGCAGGGCTTTGGCTTCTTATTCAGCACCAAGGGCCCTCCTTGCTGCCTCTGGCTTGTCCCTTGCCCTGCTATCGGGAAGGGAATAGAGGCAAACCGTGCAGTTTCAGTGCCTTAAAAACAAACCGTACCATGCCTCCCCTCCTCTTCGCCCTCTGTAGTCCTTGTGTGAAGGACTACTTCACACTAAAAATCTACATTTTGGTTTGAAATCCTCCTGAAACGGCTCTCTCATTTGTAGCACCTGTGTGGAGGACAGCAGCTGTAGTTAGATTCGATTCACAACAGCTAAAATAGATTTGAAGGGTGATCCTGCAAAAACAGCATGACAACGTCCAGAGAAACTTCTGAATCCACTCCTCCAGCGAGTACACCGCTCCTGGCAGACATTCTGAGCTATAAGGCTGCAAGAGTGTGAAGTGGAAGTTGTGCGTTTGGCTATGTTCTAGAGAAACTATGTTGGAACATACTGAAGGAACAGATGAACAGCGGAGAAGTGGATTAAGATGcaaaatgtgccaaaatatTAGCCTGGTTCCAGACCTCTATTTTTCATTGATGGTTGGGATTACAACTCTAATCAATCTGCTACCACAGCTTCCATTGTAACAAAGTGAAAGACGTTGGCGGATACATCAGTTGCTACTAATTCGCAAATAGTCTAACCTCAAATAACAGCTGACATCAGACTGAACACTGAAGCGAACACAAAATTGCATTTTCAGTCTAACTCACATCAGCCATCAGACCACCAAAATATGGCTAAAGACAGCTTTCATTGTCGCTAGCACAGTTAGCCGTTCATGTTTAGTTACGATTGACTGACAGCTGACAGCTGAAGAGCTAACTGCGCTAGAAACAAAGAGAAGTTATTTATTCGGCCATTTTTTGGCAACAAAAGGAACGTATGGATCGTGCTGCTGCAGTGGTTTGAGAAGTTTCCATGGACATTTTGATACTTTTTGTGTGACTCTGGGTTGCCAATGTAATCCACTGTAACTGCTGTGAATCACGAGTATTTCAAACTCAAAGGGTAGATCGTTGGTGGAGTATTATTGTGAGGTGCTCACATGCCGCACCTGTCTCCTGTCTTTTCCCCACCGCCTACTGTTCCAGTCCACATCCATGTCACTGTCCCACTGTCGCTCTAACCTGCTCCCCTGTGTCCTCATCCCCCGTCCTTGTCCCGTGTCCGTCATGCAGCTCCGGTGCTGAGGTCCCCCCAATCCTACACGTCTTTACTCCCCGTCTAAAACGGTGTCCTCGTTTTTGTACCTGATCCCGCCTCTAACCCGCTAACCCGAGCTGTTAGTCCCCACTCCAGCACCCCCTACCCCCCCTGCCCCACCTCCAGTCCCCTTCCTGTCAGTGGTGCAACCTGGTGTAGGCTTGTTTGAACGGGGCGAGGCCCGGTGTGACCGGCCCGCCCTCCCGCAGGTGCCAGCTGCCCCTATGCTTCAAGCACAAGCACTTAAAGCACTTTAGCTGCGCCGCTGTACTCGTCAATGCATGCAGTTAAAGACAATTGGACCTATCTGCATCTGCATACCTTTCCTTAGAGGTAATGCCAGATGAAACAGTGTGATACTGTAAGAAAACAATAATAACccagggaggaggagaaaagaaaagaatgaaaaaaaaagaaaaagaaaaaaaaaaaacgaagctACACCAGGACTTCTGACAGCAATTCTTAGCAAACACCCCTCAGAAAGTTCCCATTCAATGCaactactttcttttttgttgttgttgttgttgttgttgttgttgttattgttgttgttgttgttgtttccttttGAGAAATGCTTGTATGATCGTATGCCAACAAATCTCCACAAGGTGGACACAGCACCAAATATGCATTCACACAAGTGGTAGGGGGTCTGAGGGAGGAGGCAGGGTCCTCCCCGAGGAGCTTCCTGCCCGATGCTCTCCCCACATCCTGTGTAAAGACTTGAAAAGTGGAGAGAGTGCCGACAAAGAATGCTTGCCCGGTAGCTTGGTAGCATGAAATCGGCTGTACACTTCCTTTAATAGAGAGCAGCAACTTAGAACCAACCTGTTGGTGCTAAATCCCATCTATTCAAAGACTTGATGTACGGGGGAGGAACATacataaaaatatgtttaagCTATTCTCTCCCTAATATTTGTAAGtgtgtcttttttatatatattattattattattattattattattattatttcctggCCAGCTATGTGTCTGACTAGACATCATGTACagtacttaaaaataaaaattatttatctaAGAAAGAATTATAAGCTGATCCAAACTAGGTTTTCTTATGAACAATTCAATGACTCACCGATTGCACAGCAAAGTCTATTTGATTCAGTGTATTTTGGGGAATATAATCACTAAtgaatgtttttactttttaatgaaCCTTTTGCTTCTGTTCATCAGCAGGGTCATTTGTAAGCTCAGTGCCCAGCAGGCGACTTTCAGCCTCGGGGAAAATCTGTTGTCAGTCAGGCACTCAGGTCTCTGGTCAACTTAGTTCACTGCTTCTTAAGGCCATTGAACCTCTCACCTCTCAGTAAGTCACTTCTCTCCATGCACACCCAGCCATCCCGCCTCAGTCAGTTAGTGCAGAGCCAGGCTCACACTTCTGTAATGTcactttttatttgattttgtatcatttatttttttccctgcTGGTCACGTTAAGAATATTCTCTGTTCACgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126598 lncRNA upstream 134152 6992856 ~ 6993162 (+) True G93834
TU126587 lncRNA upstream 149768 6975644 ~ 6977546 (+) True G93823
TU126583 lncRNA upstream 151946 6974307 ~ 6975368 (+) True G93820
TU126543 lncRNA upstream 247233 6879803 ~ 6880081 (+) True G93791
TU126542 lncRNA upstream 250821 6876151 ~ 6876493 (+) True G93790
TU126663 lncRNA downstream 790 7131348 ~ 7134432 (+) True G93888
TU126671 lncRNA downstream 25777 7156335 ~ 7156719 (+) True G93896
TU126682 lncRNA downstream 102588 7233146 ~ 7235719 (+) True G93906
TU126703 lncRNA downstream 141378 7271936 ~ 7287153 (+) True G93912
TU126742 lncRNA downstream 188284 7318842 ~ 7321455 (+) True G93931
XM_039811275.1 mRNA upstream 42 7108149 ~ 7127272 (+) True igfbp3
XM_039811274.1 mRNA upstream 59380 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811272.1 mRNA upstream 156014 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039810252.1 mRNA upstream 404037 6672071 ~ 6723277 (+) True ghrhrb
XM_039810253.1 mRNA upstream 404037 6672071 ~ 6723277 (+) False ghrhrb
XM_039811515.1 mRNA downstream 132989 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 223290 7353848 ~ 7379344 (+) True LOC120565797
XM_039812274.1 mRNA downstream 267580 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA downstream 267582 7398140 ~ 7413692 (+) False LOC120566053
XM_039812533.1 mRNA downstream 284883 7415441 ~ 7423820 (+) True LOC120566212
TU126420 other upstream 758960 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 913297 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1087195 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2414129 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2833424 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 219252 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 768114 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1106812 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1106812 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 2016604 9147162 ~ 9159695 (+) True G94199

Expression Profile