RNA id: TU126682


Basic Information

Item Value
RNA id TU126682
length 1081
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G93906
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7233146 ~ 7235719 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCAATTATGTCCAAACGTTAACATACATCTCTTCATGACTGGCTCAGGGAACGCACAGTCACTGGTTTCCCTGGTTTAACTGGAGCTTACTCACCACTGGAAGGCATCATGCACATATTCATCACGGTCCATACATTCAACACCACATATCCCAGGCAGAGCCCACAGATCCTTTGGAAGGGGGCGTTTTTTTCTCCTGGAGGTGTAGTCGCTGATGCAGCTGTAGCTTAACACTGCCCCCTACTGTCTGACATTCAGTATCCATTCAACGCAAAAGGAGTGATAAAGTTGCCCTACTTGTGATCATATTTAATCCATACTCAATGCTATTTATTTGTGTCACTGCCTTTTTCAACATTGCCTTTCATAAACAGCATGTTACAACCCCctcaataatcaaaactggccagtgcaaccaccctaaaaacctattataatttcctttacataaatatagacatttgaaacaaaacttgatgcagaaaaggcacaaattgttgcagaataattcaccagaatgcaggaaattaagtgtctGATATGCTCAAAATTTGAATTTCCTTAGCAGAAAATAAATcagttcaatcaatcaatttcaCCTAAGGAAGAAAAGAAACTATTTAAGATAGAAGCCACAAAGACAAAATGCATTCActtgaaattaaatgtttacaattaaaataaataaataaaatatggtCAACTTCCTtatcattgtatattttatctGTGTGAAATCTTGAACAGACAGTTTCCCCTTTCGTCTTTGAATTTGTTGGCCTTATTTTTCATGAACACAGTCtccacactttttttatttttggtattTGTACCAATAAAGATCTCCAGTGTTGGACAGTCATGGTCTGTGTGCAGCTGACGTCCAGGACTCATTCCGGTTCGGTCTCGTGGCGTCCCAGCGCGGGGGGTAACGTGGTCCCACAGGGGCCGTGGAAGTGGAACTGAAGCGCATGGTGGCCGGTGTGTCCTCCATGTTGAATTCGGCCACAGGGACACCTCTGGCTGCCACCTGAGGAGCAAACATGGCCGCTGGATACACAATGGACGAAGTGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126671 lncRNA upstream 76427 7156335 ~ 7156719 (+) True G93896
TU126663 lncRNA upstream 98714 7131348 ~ 7134432 (+) True G93888
TU126620 lncRNA upstream 102395 7127314 ~ 7130751 (+) True G93851
TU126619 lncRNA upstream 102588 7127314 ~ 7130558 (+) False G93851
TU126598 lncRNA upstream 239984 6992856 ~ 6993162 (+) True G93834
TU126703 lncRNA downstream 36217 7271936 ~ 7287153 (+) True G93912
TU126742 lncRNA downstream 83123 7318842 ~ 7321455 (+) True G93931
TU126743 lncRNA downstream 86347 7322066 ~ 7323426 (+) True G93932
TU126744 lncRNA downstream 91452 7327171 ~ 7327686 (+) True G93933
XR_005640327.1 lncRNA downstream 158654 7394373 ~ 7395278 (+) True LOC120566054
XM_039811275.1 mRNA upstream 105874 7108149 ~ 7127272 (+) True igfbp3
XM_039811274.1 mRNA upstream 165212 7007170 ~ 7067934 (+) True si:ch211-191a24.3
XM_039811272.1 mRNA upstream 261846 6965547 ~ 6971300 (+) True si:ch211-191a24.4
XM_039810252.1 mRNA upstream 509869 6672071 ~ 6723277 (+) True ghrhrb
XM_039811515.1 mRNA downstream 27828 7263547 ~ 7285759 (+) True LOC120565613
XM_039811822.1 mRNA downstream 118129 7353848 ~ 7379344 (+) True LOC120565797
XM_039812274.1 mRNA downstream 162419 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA downstream 162421 7398140 ~ 7413692 (+) False LOC120566053
XM_039812533.1 mRNA downstream 179722 7415441 ~ 7423820 (+) True LOC120566212
TU126420 other upstream 864792 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1019129 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1193027 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2519961 4711561 ~ 4713185 (+) False trmt1l
XR_005640230.1 other upstream 2939256 4290341 ~ 4293890 (+) False LOC120565391
TU126750 other downstream 114091 7349810 ~ 7350587 (+) True G93938
TU126885 other downstream 662953 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 1001651 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 1001651 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1911443 9147162 ~ 9159695 (+) True G94199

Expression Profile