RNA id: TU126801


Basic Information

Item Value
RNA id TU126801
length 354
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G93985
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7524990 ~ 7525343 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTGTCCTGTGGGCCAAGGCTCATTTAAAATGGACTATTTCAAAGTGTAATAGTGTTCTATGGTCAGACGAGTCCAAATTTGACATTCTTGTTGGAAATCACGGACGCCATGTCCTCCGGGCTAAAGAGGAAGGAGACCTTCCAGCATGTTATCAGCGTTCAGTTCAAAAGCCAGCATCTCTGATGGTATGGGGGTGCATAAGTGCATACGGTATGGGCAGCTTGCATGTTTTGGAAGGCTCTGTGAATGCTGAAAGGTATATAAAGGTTTTAGAGCAACATATGCTTCCCTCCAAACGACGTCTATTTCATGGAAGGCCTTGTATATTTCAGCAGGACAATGCAAACAGCAT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640327.1 lncRNA upstream 129712 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 197304 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 201564 7322066 ~ 7323426 (+) True G93932
TU126742 lncRNA upstream 203535 7318842 ~ 7321455 (+) True G93931
TU126703 lncRNA upstream 237837 7271936 ~ 7287153 (+) True G93912
TU126802 lncRNA downstream 31911 7557254 ~ 7615427 (+) True G93986
TU126854 lncRNA downstream 353576 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 355195 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 366881 7892224 ~ 7895718 (+) True LOC120565893
TU126892 lncRNA downstream 428072 7953415 ~ 7955102 (+) True G94056
XM_039812533.1 mRNA upstream 101170 7415441 ~ 7423820 (+) True LOC120566212
XM_039812274.1 mRNA upstream 111298 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA upstream 111298 7398140 ~ 7413692 (+) False LOC120566053
XM_039811822.1 mRNA upstream 145646 7353848 ~ 7379344 (+) True LOC120565797
XM_039811515.1 mRNA upstream 239231 7263547 ~ 7285759 (+) True LOC120565613
XM_039812332.1 mRNA downstream 54849 7580192 ~ 7581837 (+) True foxq1b
XM_039812331.1 mRNA downstream 60798 7586141 ~ 7590299 (+) True foxf2b
XM_039810225.1 mRNA downstream 78117 7603460 ~ 7605630 (+) True LOC120564954
XM_039811558.1 mRNA downstream 336871 7862214 ~ 7867728 (+) True LOC120565646
XM_039810958.1 mRNA downstream 343248 7868591 ~ 7873986 (+) True LOC120565295
TU126750 other upstream 174403 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1156636 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1310973 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1484871 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2811805 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 373329 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 712027 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 712027 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1621819 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 2026953 9552296 ~ 9557568 (+) True G94239

Expression Profile