RNA id: TU126802


Basic Information

Item Value
RNA id TU126802
length 248
lncRNA type read_through
GC content 0.51
exon number 2
gene id G93986
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7557254 ~ 7615427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttgaccaactgccactttgctcgtttgaaagccatgatgtctctctctctctctctcatgggtgggccaaattctctgggcgggcaaagcagagaaaggggaggtaaccttgctccttatgacctcataaggagaagattccagattggcccatctgagctttcattttctcaaaggcagagcaggatacccagggctcggtttacacctatcaccatttctagccactgggggaccataggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126801 lncRNA upstream 31911 7524990 ~ 7525343 (+) True G93985
XR_005640327.1 lncRNA upstream 161976 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 229568 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 233828 7322066 ~ 7323426 (+) True G93932
TU126742 lncRNA upstream 235799 7318842 ~ 7321455 (+) True G93931
TU126854 lncRNA downstream 263492 7878919 ~ 7883828 (+) False LOC120565294
TU126855 lncRNA downstream 265111 7880538 ~ 7883828 (+) False LOC120565294
XR_005640303.1 lncRNA downstream 276797 7892224 ~ 7895718 (+) True LOC120565893
TU126892 lncRNA downstream 337988 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 375861 7991288 ~ 7991555 (+) True G94057
XM_039812533.1 mRNA upstream 133434 7415441 ~ 7423820 (+) True LOC120566212
XM_039812274.1 mRNA upstream 143562 7398138 ~ 7413692 (+) True LOC120566053
XM_039812276.1 mRNA upstream 143562 7398140 ~ 7413692 (+) False LOC120566053
XM_039811822.1 mRNA upstream 177910 7353848 ~ 7379344 (+) True LOC120565797
XM_039811515.1 mRNA upstream 271495 7263547 ~ 7285759 (+) True LOC120565613
XM_039811558.1 mRNA downstream 246787 7862214 ~ 7867728 (+) True LOC120565646
XM_039810958.1 mRNA downstream 253164 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA downstream 253178 7868605 ~ 7873986 (+) False LOC120565295
XM_039810957.1 mRNA downstream 265033 7880460 ~ 7890177 (+) True LOC120565294
XM_039811516.1 mRNA downstream 280718 7896145 ~ 7905146 (+) True LOC120565614
TU126750 other upstream 206667 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1188900 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1343237 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1517135 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 2844069 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 283245 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 621943 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 621943 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1531735 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1936869 9552296 ~ 9557568 (+) True G94239

Expression Profile