RNA id: TU126855


Basic Information

Item Value
RNA id TU126855
length 203
lncRNA type sense_over
GC content 0.45
exon number 2
gene id LOC120565294
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7878919 ~ 7890177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCACTGGAACTCCGCTGGTTGGTTTTGTGGATGCTCCGGATGTTACCGATTTGACAGCACAAGCAAGTTTAAATCCCAGTGCAGTTTGAGTTTTTACTAAACGTTGGACGTCAGGAAATCTGAAACATCAGATCAAAATGGACCCTGAGATGGACTCGCAGCTGAAGATTGGTTTTATTGGTGCAGGGAACATGGCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126802 lncRNA upstream 265111 7557254 ~ 7615427 (+) True G93986
TU126801 lncRNA upstream 355195 7524990 ~ 7525343 (+) True G93985
XR_005640327.1 lncRNA upstream 485260 7394373 ~ 7395278 (+) True LOC120566054
TU126744 lncRNA upstream 552852 7327171 ~ 7327686 (+) True G93933
TU126743 lncRNA upstream 557112 7322066 ~ 7323426 (+) True G93932
XR_005640303.1 lncRNA downstream 8396 7892224 ~ 7895718 (+) True LOC120565893
TU126892 lncRNA downstream 69587 7953415 ~ 7955102 (+) True G94056
TU126896 lncRNA downstream 107460 7991288 ~ 7991555 (+) True G94057
TU126898 lncRNA downstream 219165 8102993 ~ 8103363 (+) True G94059
TU126899 lncRNA downstream 219662 8103490 ~ 8103804 (+) True G94060
XM_039810958.1 mRNA upstream 6552 7868591 ~ 7873986 (+) True LOC120565295
XM_039810959.1 mRNA upstream 6552 7868605 ~ 7873986 (+) False LOC120565295
XM_039811558.1 mRNA upstream 12810 7862214 ~ 7867728 (+) True LOC120565646
XM_039810225.1 mRNA upstream 274908 7603460 ~ 7605630 (+) True LOC120564954
XM_039812331.1 mRNA upstream 290239 7586141 ~ 7590299 (+) True foxf2b
XM_039811516.1 mRNA downstream 12317 7896145 ~ 7905146 (+) True LOC120565614
XM_039812447.1 mRNA downstream 324625 8208453 ~ 8214500 (+) True rgs4
XM_039810246.1 mRNA downstream 1137689 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 1173513 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 1183350 9067178 ~ 9070676 (+) True LOC120566074
TU126750 other upstream 529951 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 1512184 6354897 ~ 6368354 (+) False rhpn1
TU126347 other upstream 1666521 6202085 ~ 6214017 (+) True G93638
TU126315 other upstream 1840419 6035369 ~ 6040119 (+) False G93613
TU125908 other upstream 3167353 4711561 ~ 4713185 (+) False trmt1l
TU126885 other downstream 14844 7898672 ~ 7905247 (+) False LOC120565614
TU126919 other downstream 353542 8237370 ~ 8245821 (+) False G94073
TU126920 other downstream 353542 8237370 ~ 8254575 (+) True G94073
TU127064 other downstream 1263334 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 1668468 9552296 ~ 9557568 (+) True G94239

Expression Profile