RNA id: TU127007



Basic Information


Item Value
RNA id TU127007
length 724
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G94151
representative True

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 8614911 ~ 8615634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


aaattacaatctaggcagtacttaatatcataaatattataatatacatagtgtttaatctgaatgactaagcaaagcacatatatctaaacacagaaatgcacatcaatatcaatatcaatgttacacattaaaccagtaacccaaaaccacaaaggtgtatgttggcctaaagtgaaaacagtgagtgtagttttagatagcgacgctgtgcacagcaatccattaccaatgtaaagcgattgactacatttcccttccagcaccgcaaccaggaagtagcttgtgtgacagtgagacgcaccaatttcaaacatttactggaatatagtcacggatactatcgagtcgacagcgttaaacatcagactgcaaataaggttttatcagcgtgaccaacgtaacagttatcaagcaaacaaatcgcgcacgtacatatcggcagcacagcagtagagcaacagacaaacaaacttaAACCGCAGCTCAAtgtagcgaaacagcagcttaccggtggcgcatctctcctgacgagacaacatgtcggaactagtactcggtcccgtttatagcccgtgctcattcatttctggattctaacacatcgtcttttttctcttttgggatcttactgaTCCATGTTTCAACTTTTGACTGGACGGTACTTCAATCAGGTAAGTCCCTCCCACCTATTAACCTGCGGTACATTGCTGTTGAACACCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126921 lncRNA upstream 328475 8237370 ~ 8286436 (+) False G94073
TU126923 lncRNA upstream 334939 8278804 ~ 8279972 (+) True G94075
TU126914 lncRNA upstream 436428 8176269 ~ 8178483 (+) True G94068
TU126910 lncRNA upstream 454372 8159603 ~ 8160539 (+) True G94064
TU126907 lncRNA upstream 464041 8150462 ~ 8150870 (+) True G94062
TU127009 lncRNA downstream 37422 8653056 ~ 8653424 (+) True G94153
TU127024 lncRNA downstream 384529 9000163 ~ 9000460 (+) True G94167
TU127026 lncRNA downstream 385822 9001456 ~ 9001706 (+) True G94169
TU127056 lncRNA downstream 474194 9089828 ~ 9096292 (+) True G94192
TU127065 lncRNA downstream 531528 9147162 ~ 9168877 (+) False G94199
XM_039812447.1 mRNA upstream 400411 8208453 ~ 8214500 (+) True rgs4
XM_039811516.1 mRNA upstream 709765 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 724734 7880460 ~ 7890177 (+) True LOC120565294
XM_039810958.1 mRNA upstream 740925 7868591 ~ 7873986 (+) True LOC120565295
XM_039810246.1 mRNA downstream 405883 9021517 ~ 9033680 (+) True LOC120564973
XM_039810130.1 mRNA downstream 441707 9057341 ~ 9062036 (+) True LOC120564878
XM_039812316.1 mRNA downstream 451544 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA downstream 451548 9067182 ~ 9070676 (+) False LOC120566074
XM_039810147.1 mRNA downstream 465225 9080859 ~ 9083857 (+) True LOC120564889
TU126920 other upstream 360336 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 369090 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 709664 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 1264324 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 2246557 6354897 ~ 6368354 (+) False rhpn1
TU127064 other downstream 531528 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 936662 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 956664 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 1201987 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 1229115 9844749 ~ 9845804 (+) False LOC120565620

Expression Profile